Unsupervised learning of shape complexity: Application to brain development

Ahmed Serag, Ioannis S. Gousias, Antonios Makropoulos, Paul Aljabar, Joseph V. Hajnal, James P. Boardman, Serena J. Counsell, Daniel Rueckert

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

9 Scopus citations

Abstract

This paper presents a framework for unsupervised learning of shape complexity in the developing brain. It learns the complexity in different brain structures by applying several shape complexity measures to each individual structure, and then using feature selection to select the measures that best describe the changes in complexity of each structure. Then, feature selection is applied again to assign a score to each structure, in order to find which structure can be a good biomarker of brain development. This study was carried out using T2-weighted MR images from 224 premature neonates (the age range at the time of scan was 26.7 to 44.86 weeks post-menstrual age). The advantage of the proposed framework is that one can extract as many ROIs as desired, and the framework automatically finds the ones which can be used as good biomarkers. However, the example application focuses on neonatal brain image data, the proposed framework for combining information from multiple measures may be applied more generally to other populations and other forms of imaging data.

Original languageEnglish
Title of host publicationSpatio-temporal Image Analysis for Longitudinal and Time-Series Image Data - Second International Workshop, STIA 2012, Held in Conjunction with MICCAI 2012, Proceedings
Pages88-99
Number of pages12
DOIs
StatePublished - 2012
Externally publishedYes
Event2nd International Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data, STIA 2012, Held in Conjunction with the International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2012 - Nice, France
Duration: 1 Oct 20121 Oct 2012

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume7570 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference2nd International Workshop on Spatiotemporal Image Analysis for Longitudinal and Time-Series Image Data, STIA 2012, Held in Conjunction with the International Conference on Medical Image Computing and Computer Assisted Intervention, MICCAI 2012
Country/TerritoryFrance
CityNice
Period1/10/121/10/12

Keywords

  • MRI
  • Shape complexity
  • biomarker extraction
  • brain development
  • dimension reduction
  • feature selection
  • neonatal

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