The scverse project provides a computational ecosystem for single-cell omics data analysis

Scverse Community

doi:10.1038/s41587-023-01733-8

The scverse project provides a computational ecosystem for single-cell omics data analysis

Scverse Community

Chair of Mathematical Modelling of Biological Systems

Helmholtz Zentrum München German Research Center for Environmental Health
European Molecular Biology Laboratory Heidelberg
German Cancer Research Center
Heidelberg University
Technical University of Munich
Medical University Innsbruck
Center for Computational Biology
Novo Nordisk Foundation Center for Protein Research
Cellarity, Inc.
Department of Electrical Engineering and Computer Sciences
University of Bonn
Genentech, Inc
Stanford University
Boehringer-Ingelheim Pharma GmbH
University of Michigan, Ann Arbor
University of California San Francisco
Massachusetts Institute of Technology
Harvard–Massachusetts Institute of Technology Division of Health Sciences and Technology
The Broad Institute of MIT and Harvard
Weill Cornell Medical College
Howard Hughes Medical Institute
Wellcome Sanger Institute
University of Cambridge
University of Innsbruck
Lamin Labs
Massachusetts Institute of Technology
Chan Zuckerberg Biohub

Research output: Contribution to journal › Letter › peer-review

170 Scopus citations

Original language	English
Pages (from-to)	604-606
Number of pages	3
Journal	Nature Biotechnology
Volume	41
Issue number	5
DOIs	https://doi.org/10.1038/s41587-023-01733-8
State	Published - May 2023

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10.1038/s41587-023-01733-8

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@article{e82206f1ef714ceca7837538197cb9ab,

title = "The scverse project provides a computational ecosystem for single-cell omics data analysis",

author = "\{Scverse Community\} and Isaac Virshup and Danila Bredikhin and Lukas Heumos and Giovanni Palla and Gregor Sturm and Adam Gayoso and Ilia Kats and Mikaela Koutrouli and Philipp Angerer and Volker Bergen and Pierre Boyeau and Maren B{\"u}ttner and Gokcen Eraslan and David Fischer and Max Frank and Justin Hong and Michal Klein and Marius Lange and Romain Lopez and Mohammad Lotfollahi and Luecken, \{Malte D.\} and Fidel Ramirez and Jeffrey Regier and Sergei Rybakov and Schaar, \{Anna C.\} and \{Valiollah Pour Amiri\}, Valeh and Philipp Weiler and Galen Xing and Bonnie Berger and Dana Pe{\textquoteright}er and Aviv Regev and Teichmann, \{Sarah A.\} and Francesca Finotello and Wolf, \{F. Alexander\} and Nir Yosef and Oliver Stegle and Theis, \{Fabian J.\}",

note = "Funding Information: The authors would like to thank all scverse contributors who opened issues, contributed code or answered questions on scverse forums to guide novice and advanced users. D.B. acknowledges funding by the EMBL International PhD Programme and Darwin Trust Fellowship. G.S. was supported by a DOC fellowship from the Austrian Academy of Sciences. F.F. was supported by the Austrian Science Fund (FWF) (T 974-B30). G.P. is supported by the Helmholtz Association under the joint research school Munich School for Data Science. ",

year = "2023",

month = may,

doi = "10.1038/s41587-023-01733-8",

language = "English",

volume = "41",

pages = "604--606",

journal = "Nature Biotechnology",

issn = "1087-0156",

publisher = "Nature Research",

number = "5",

}

TY - JOUR

T1 - The scverse project provides a computational ecosystem for single-cell omics data analysis

AU - Scverse Community

AU - Virshup, Isaac

AU - Bredikhin, Danila

AU - Heumos, Lukas

AU - Palla, Giovanni

AU - Sturm, Gregor

AU - Gayoso, Adam

AU - Kats, Ilia

AU - Koutrouli, Mikaela

AU - Angerer, Philipp

AU - Bergen, Volker

AU - Boyeau, Pierre

AU - Büttner, Maren

AU - Eraslan, Gokcen

AU - Fischer, David

AU - Frank, Max

AU - Hong, Justin

AU - Klein, Michal

AU - Lange, Marius

AU - Lopez, Romain

AU - Lotfollahi, Mohammad

AU - Luecken, Malte D.

AU - Ramirez, Fidel

AU - Regier, Jeffrey

AU - Rybakov, Sergei

AU - Schaar, Anna C.

AU - Valiollah Pour Amiri, Valeh

AU - Weiler, Philipp

AU - Xing, Galen

AU - Berger, Bonnie

AU - Pe’er, Dana

AU - Regev, Aviv

AU - Teichmann, Sarah A.

AU - Finotello, Francesca

AU - Wolf, F. Alexander

AU - Yosef, Nir

AU - Stegle, Oliver

AU - Theis, Fabian J.

N1 - Funding Information: The authors would like to thank all scverse contributors who opened issues, contributed code or answered questions on scverse forums to guide novice and advanced users. D.B. acknowledges funding by the EMBL International PhD Programme and Darwin Trust Fellowship. G.S. was supported by a DOC fellowship from the Austrian Academy of Sciences. F.F. was supported by the Austrian Science Fund (FWF) (T 974-B30). G.P. is supported by the Helmholtz Association under the joint research school Munich School for Data Science.

PY - 2023/5

Y1 - 2023/5

UR - https://www.scopus.com/pages/publications/85152429226

U2 - 10.1038/s41587-023-01733-8

DO - 10.1038/s41587-023-01733-8

M3 - Letter

C2 - 37037904

AN - SCOPUS:85152429226

SN - 1087-0156

VL - 41

SP - 604

EP - 606

JO - Nature Biotechnology

JF - Nature Biotechnology

IS - 5

ER -

The scverse project provides a computational ecosystem for single-cell omics data analysis

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