The PEDANT genome database in 2005

M. Louise Riley; Thorsten Schmidt; Christian Wagner; Hans Werner Mewes; Dmitrij Frishman

doi:10.1093/nar/gki019

The PEDANT genome database in 2005

M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans Werner Mewes, Dmitrij Frishman

Life Sciences

Research output: Contribution to journal › Article › peer-review

45 Scopus citations

Abstract

The PEDANT genome database (http://pedant.gsf.de) contains pre-computed bioinformatics analyses of publicly available genomes. Its main mission is to provide robust automatic annotation of the vast majority of amino acid sequences, which have not been subjected to in-depth manual curation by human experts in high-quality protein sequence databases. By design PEDANT annotation is genome-oriented, making it possible to explore genomic context of gene products, and evaluate functional and structural content of genomes using a category-based query mechanism. At present, the PEDANT database contains exhaustive annotation of over 1240 000 proteins from 270 eubacterial, 23 archeal and 41 eukaryotic genomes.

Original language	English
Pages (from-to)	D308-D310
Journal	Nucleic Acids Research
Volume	33
Issue number	DATABASE ISS.
DOIs	https://doi.org/10.1093/nar/gki019
State	Published - 1 Jan 2005

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The PEDANT genome database in 2005

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