TY - JOUR
T1 - The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective
AU - Karapiperis, Christos
AU - Chasapi, Anastasia
AU - Angelis, Lefteris
AU - Scouras, Zacharias G.
AU - Mastroberardino, Pier G.
AU - Tapio, Soile
AU - Atkinson, Michael J.
AU - Ouzounis, Christos A.
N1 - Publisher Copyright:
© Copyright 2021, Mary Ann Liebert, Inc.
PY - 2021/2
Y1 - 2021/2
N2 - As high-throughput approaches in biological and biomedical research are transforming the life sciences into information-driven disciplines, modern analytics platforms for big data have started to address the needs for efficient and systematic data analysis and interpretation. We observe that radiobiology is following this general trend, with -omics information providing unparalleled depth into the biomolecular mechanisms of radiation response - defined as systems radiobiology. We outline the design of computational frameworks and discuss the analysis of big data in low-dose ionizing radiation (LDIR) responses of the mammalian brain. Following successful examples and best practices of approaches for the analysis of big data in life sciences and health care, we present the needs and requirements for radiation research. Our goal is to raise awareness for the radiobiology community about the new technological possibilities that can capture complex information and execute data analytics on a large scale. The production of large data sets from genome-wide experiments (quantity) and the complexity of radiation research with multidimensional experimental designs (quality) will necessitate the adoption of latest information technologies. The main objective was to translate research results into applied clinical and epidemiological practice and understand the responses of biological tissues to LDIR to define new radiation protection policies. We envisage a future where multidisciplinary teams include data scientists, artificial intelligence experts, DevOps engineers, and of course radiation experts to fulfill the augmented needs of the radiobiology community, accelerate research, and devise new strategies.
AB - As high-throughput approaches in biological and biomedical research are transforming the life sciences into information-driven disciplines, modern analytics platforms for big data have started to address the needs for efficient and systematic data analysis and interpretation. We observe that radiobiology is following this general trend, with -omics information providing unparalleled depth into the biomolecular mechanisms of radiation response - defined as systems radiobiology. We outline the design of computational frameworks and discuss the analysis of big data in low-dose ionizing radiation (LDIR) responses of the mammalian brain. Following successful examples and best practices of approaches for the analysis of big data in life sciences and health care, we present the needs and requirements for radiation research. Our goal is to raise awareness for the radiobiology community about the new technological possibilities that can capture complex information and execute data analytics on a large scale. The production of large data sets from genome-wide experiments (quantity) and the complexity of radiation research with multidimensional experimental designs (quality) will necessitate the adoption of latest information technologies. The main objective was to translate research results into applied clinical and epidemiological practice and understand the responses of biological tissues to LDIR to define new radiation protection policies. We envisage a future where multidisciplinary teams include data scientists, artificial intelligence experts, DevOps engineers, and of course radiation experts to fulfill the augmented needs of the radiobiology community, accelerate research, and devise new strategies.
KW - big data analytics
KW - bioinformatics
KW - biomarker discovery
KW - genomics
KW - low-dose ionizing radiation
KW - network science
KW - radiation protection
KW - systems radiobiology
UR - http://www.scopus.com/inward/record.url?scp=85099281262&partnerID=8YFLogxK
U2 - 10.1089/big.2019.0144
DO - 10.1089/big.2019.0144
M3 - Review article
C2 - 32991205
AN - SCOPUS:85099281262
SN - 2167-6461
VL - 9
SP - 63
EP - 71
JO - Big Data
JF - Big Data
IS - 1
ER -