TY - JOUR
T1 - Structured Knowledge Graphs for Classifying Unseen Patterns in Radiographs
AU - Prabhakar, Chinmay
AU - Sekuboyina, Anjany
AU - Li, Hongwei Bran
AU - Paetzold, Johannes C.
AU - Shit, Suprosanna
AU - Amiranashvili, Tamaz
AU - Kleesiek, Jens
AU - Menze, Bjoern
N1 - Publisher Copyright:
© 2022 Proceedings of Machine Learning Research. All rights reserved.
PY - 2022
Y1 - 2022
N2 - The presence of annotated datasets is crucial to the performance of modern machine learning algorithms. However, obtaining richly annotated datasets is not always possible, especially for novel or rare diseases. This becomes especially challenging in the realm of multi-label classification of chest radiographs, due to the presence of numerous unknown disease types and the limited information inherent to x-ray images. Ideally, we would like to develop models that can reliably label such unseen patterns (classes). In this work, we present a knowledge graph-based approach to predict such novel, unseen classes. Our method directly injects the semantic relationships between seen and unseen disease classes. Specifically, we propose a principled approach to parsing and processing a knowledge graph conditioned on the given task. We show that our method matches the labeling performance of the state-of-The-Art while outperforming it on unseen classes by a substantial 2% gain on chest X-ray classification. Crucially, we demonstrate that embedding diseasespecific knowledge as a graph provides inherent explainability. (The code is available at https://github.com/chinmay5/ml-cxr-gzsl-kg).
AB - The presence of annotated datasets is crucial to the performance of modern machine learning algorithms. However, obtaining richly annotated datasets is not always possible, especially for novel or rare diseases. This becomes especially challenging in the realm of multi-label classification of chest radiographs, due to the presence of numerous unknown disease types and the limited information inherent to x-ray images. Ideally, we would like to develop models that can reliably label such unseen patterns (classes). In this work, we present a knowledge graph-based approach to predict such novel, unseen classes. Our method directly injects the semantic relationships between seen and unseen disease classes. Specifically, we propose a principled approach to parsing and processing a knowledge graph conditioned on the given task. We show that our method matches the labeling performance of the state-of-The-Art while outperforming it on unseen classes by a substantial 2% gain on chest X-ray classification. Crucially, we demonstrate that embedding diseasespecific knowledge as a graph provides inherent explainability. (The code is available at https://github.com/chinmay5/ml-cxr-gzsl-kg).
KW - generalized zero-shot learning
KW - graph neural networks
KW - knowledge graphs
UR - http://www.scopus.com/inward/record.url?scp=85171572643&partnerID=8YFLogxK
M3 - Conference article
AN - SCOPUS:85171572643
SN - 2640-3498
VL - 194
SP - 45
EP - 60
JO - Proceedings of Machine Learning Research
JF - Proceedings of Machine Learning Research
T2 - 1st International Workshop on Geometric Deep Learning in Medical Image Analysis, GeoMedIA 2022
Y2 - 18 November 2022
ER -