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SOMnmR: An R Package for Analyzing CP MAS 13C NMR Spectra of Environmental Samples

  • Luis Carlos Colocho Hurtarte
  • , Noelia Garcia-Franco
  • , Gabriela Villalba Ayala
  • , Joerg Prietzel
  • , Ingrid Koegel-Knabner
  • University of Lausanne
  • Technical University of Munich

Research output: Contribution to journalArticlepeer-review

Abstract

Cross-polarization (CP) magic angle spinning (MAS) 13C NMR spectroscopy is a versatile tool for studying organic matter (OM) in soils. Despite its versatility, the extensive post-processing required—including spinning-sidebands (SSB) correction and integration—limits its broader use. We present a new open-source R package, “SOMnmR” (accessible on CRAN and GitHub), designed to quickly process a large number of spectra, correcting for SSBs if required. The package computes the relative abundance of functional groups and can also model organic matter composition using end-member compounds. We describe the package's installation and functionalities and provide examples that (a) compare the results of two different spectrometers and (b) model the results of a large CP MAS 13C NMR data set. Overall, the presented package is a valuable tool for the fast analysis of 13C NMR data sets.

Original languageEnglish
Article numbere2024JG008288
JournalJournal of Geophysical Research: Biogeosciences
Volume130
Issue number2
DOIs
StatePublished - Feb 2025

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