Small data methods in omics: the power of one

Kevin G. Johnston, Steven F. Grieco, Qing Nie, Fabian J. Theis, Xiangmin Xu

Research output: Contribution to journalArticlepeer-review

Abstract

Over the last decade, biology has begun utilizing ‘big data’ approaches, resulting in large, comprehensive atlases in modalities ranging from transcriptomics to neural connectomics. However, these approaches must be complemented and integrated with ‘small data’ approaches to efficiently utilize data from individual labs. Integration of smaller datasets with major reference atlases is critical to provide context to individual experiments, and approaches toward integration of large and small data have been a major focus in many fields in recent years. Here we discuss progress in integration of small data with consortium-sized atlases across multiple modalities, and its potential applications. We then examine promising future directions for utilizing the power of small data to maximize the information garnered from small-scale experiments. We envision that, in the near future, international consortia comprising many laboratories will work together to collaboratively build reference atlases and foundation models using small data methods.

Original languageEnglish
Pages (from-to)1597-1602
Number of pages6
JournalNature Methods
Volume21
Issue number9
DOIs
StatePublished - Sep 2024

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