TY - JOUR
T1 - Quantitative comparison of competing PDE models for Pomlp dynamics in fission yeast
AU - Hross, Sabrina
AU - Fiedler, Anna
AU - Theis, Fabian J.
AU - Hasenauer, Jan
N1 - Publisher Copyright:
© 2016
PY - 2016
Y1 - 2016
N2 - Gradient formation of Poml is a key regulator of cell cycle and cell growth in fission yeast (Schizosaccharomyces pombe). A variety of models to explain Poml gradient formation have been proposed, a quantitative analysis and comparison of these models is, however, still missing. In this work we present four models from the literature and perform a quantitative comparison using published single-cell images of the gradient formation process. For the comparison of these partial differential equation (PDE) models we use state-of-the-art techniques for parameter estimation together with model selection. The model selection supports the hypothesis that buffering of the gradient is achieved via clustering. The selected model does, however, not ensure mass conservation, which might be considered as problematic.
AB - Gradient formation of Poml is a key regulator of cell cycle and cell growth in fission yeast (Schizosaccharomyces pombe). A variety of models to explain Poml gradient formation have been proposed, a quantitative analysis and comparison of these models is, however, still missing. In this work we present four models from the literature and perform a quantitative comparison using published single-cell images of the gradient formation process. For the comparison of these partial differential equation (PDE) models we use state-of-the-art techniques for parameter estimation together with model selection. The model selection supports the hypothesis that buffering of the gradient is achieved via clustering. The selected model does, however, not ensure mass conservation, which might be considered as problematic.
KW - Pom1 signaling
KW - gradient formation
KW - parameter estimation
KW - partial differential equation
KW - systems biology
UR - http://www.scopus.com/inward/record.url?scp=85008400358&partnerID=8YFLogxK
U2 - 10.1016/j.ifacol.2016.12.136
DO - 10.1016/j.ifacol.2016.12.136
M3 - Article
AN - SCOPUS:85008400358
SN - 1474-6670
VL - 49
SP - 264
EP - 269
JO - IFAC Proceedings Volumes (IFAC-PapersOnline)
JF - IFAC Proceedings Volumes (IFAC-PapersOnline)
IS - 26
ER -