Proceedings of the EuBIC-MS developers meeting 2023

Pedro Beltrao, Tim Van Den Bossche, Ralf Gabriels, Tanja Holstein, Tobias Kockmann, Alireza Nameni, Christian Panse, Ralph Schlapbach, Ludwig Lautenbacher, Matthias Mattanovich, Alexey Nesvizhskii, Bart Van Puyvelde, Jonas Scheid, Veit Schwämmle, Maximilian Strauss, Anna Klimovskaia Susmelj, Matthew The, Henry Webel, Mathias Wilhelm, Dirk WinkelhardtWitold E. Wolski, Muyao Xi

Research output: Contribution to journalArticlepeer-review

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Abstract

The 2023 European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) Developers Meeting was held from January 15th to January 20th, 2023, in Congressi Stefano Franscin at Monte Verità in Ticino, Switzerland. The participants were scientists and developers working in computational mass spectrometry (MS), metabolomics, and proteomics. The 5-day program was split between introductory keynote lectures and parallel hackathon sessions focusing on “Artificial Intelligence in proteomics” to stimulate future directions in the MS-driven omics areas. During the latter, the participants developed bioinformatics tools and resources addressing outstanding needs in the community. The hackathons allowed less experienced participants to learn from more advanced computational MS experts and actively contribute to highly relevant research projects. We successfully produced several new tools applicable to the proteomics community by improving data analysis and facilitating future research.

Original languageEnglish
Article number105246
JournalJournal of Proteomics
Volume305
DOIs
StatePublished - 15 Aug 2024

Keywords

  • Artificial intelligence
  • Benchmark development
  • Bioinformatics
  • Computational mass spectrometry
  • Deep learning
  • Mass spectrometry
  • Metabolomics
  • Metaproteomics
  • Predicted spectra
  • Proteomics
  • Spectrum clustering
  • Visualization

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