PEDANT genome database: 10 years online

M. Louise Riley; Thorsten Schmidt; Irena I. Artamonova; Christian Wagner; Andreas Volz; Klaus Heumann; Hans Werner Mewes; Dmitrij Frishman

doi:10.1093/nar/gkl1005

PEDANT genome database: 10 years online

M. Louise Riley, Thorsten Schmidt, Irena I. Artamonova, Christian Wagner, Andreas Volz, Klaus Heumann, Hans Werner Mewes, Dmitrij Frishman

Life Sciences

Research output: Contribution to journal › Article › peer-review

23 Scopus citations

Abstract

The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in Java™ allows for more efficient navigation of the genome data, extended search capabilities, user customization and export facilities. The DNA and Protein viewers have been made highly dynamic and customizable. We also provide Web Services to access the entire body of PEDANT data programmatically. Finally, we report on the application of association rule mining for automatic detection of potential annotation errors. PEDANT is freely accessible to academic users at http://pedant.gsf.de.

Original language	English
Pages (from-to)	D354-D357
Journal	Nucleic Acids Research
Volume	35
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkl1005
State	Published - Jan 2007

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title = "PEDANT genome database: 10 years online",

abstract = "The PEDANT genome database provides exhaustive annotation of 468 genomes by a broad set of bioinformatics algorithms. We describe recent developments of the PEDANT Web server. The all-new Graphical User Interface (GUI) implemented in Java{\texttrademark} allows for more efficient navigation of the genome data, extended search capabilities, user customization and export facilities. The DNA and Protein viewers have been made highly dynamic and customizable. We also provide Web Services to access the entire body of PEDANT data programmatically. Finally, we report on the application of association rule mining for automatic detection of potential annotation errors. PEDANT is freely accessible to academic users at http://pedant.gsf.de.",

author = "Riley, {M. Louise} and Thorsten Schmidt and Artamonova, {Irena I.} and Christian Wagner and Andreas Volz and Klaus Heumann and Mewes, {Hans Werner} and Dmitrij Frishman",

note = "Funding Information: The authors are grateful to Richard Gregory for assistance with the Web Services. Irena Artamonova was supported by the EU Network of Excellence {\textquoteleft}Biosapiens{\textquoteright}. Funding to pay the Open Access publication charges for this article was provided by the GSF.",

year = "2007",

month = jan,

doi = "10.1093/nar/gkl1005",

language = "English",

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AU - Riley, M. Louise

AU - Schmidt, Thorsten

AU - Artamonova, Irena I.

AU - Wagner, Christian

AU - Volz, Andreas

AU - Heumann, Klaus

AU - Mewes, Hans Werner

AU - Frishman, Dmitrij

N1 - Funding Information: The authors are grateful to Richard Gregory for assistance with the Web Services. Irena Artamonova was supported by the EU Network of Excellence ‘Biosapiens’. Funding to pay the Open Access publication charges for this article was provided by the GSF.

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PEDANT genome database: 10 years online

Abstract

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