Neural Implicit k-Space for Binning-Free Non-Cartesian Cardiac MR Imaging

Wenqi Huang, Hongwei Bran Li, Jiazhen Pan, Gastao Cruz, Daniel Rueckert, Kerstin Hammernik

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

7 Scopus citations

Abstract

In this work, we propose a novel image reconstruction framework that directly learns a neural implicit representation in k-space for ECG-triggered non-Cartesian Cardiac Magnetic Resonance Imaging (CMR). While existing methods bin acquired data from neighboring time points to reconstruct one phase of the cardiac motion, our framework allows for a continuous, binning-free, and subject-specific k-space representation. We assign a unique coordinate that consists of time, coil index, and frequency domain location to each sampled k-space point. We then learn the subject-specific mapping from these unique coordinates to k-space intensities using a multi-layer perceptron with frequency domain regularization. During inference, we obtain a complete k-space for Cartesian coordinates and an arbitrary temporal resolution. A simple inverse Fourier transform recovers the image, eliminating the need for density compensation and costly non-uniform Fourier transforms for non-Cartesian data. This novel imaging framework was tested on 42 radially sampled datasets from 6 subjects. The proposed method outperforms other techniques qualitatively and quantitatively using data from four and one heartbeat(s) and 30 cardiac phases. Our results for one heartbeat reconstruction of 50 cardiac phases show improved artifact removal and spatio-temporal resolution, leveraging the potential for real-time CMR. (Code available: https://github.com/wenqihuang/NIK_MRI ).

Original languageEnglish
Title of host publicationInformation Processing in Medical Imaging - 28th International Conference, IPMI 2023, Proceedings
EditorsAlejandro Frangi, Marleen de Bruijne, Demian Wassermann, Nassir Navab
PublisherSpringer Science and Business Media Deutschland GmbH
Pages548-560
Number of pages13
ISBN (Print)9783031340475
DOIs
StatePublished - 2023
Event28th International Conference on Information Processing in Medical Imaging, IPMI 2023 - San Carlos de Bariloche, Argentina
Duration: 18 Jun 202323 Jun 2023

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume13939 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference28th International Conference on Information Processing in Medical Imaging, IPMI 2023
Country/TerritoryArgentina
CitySan Carlos de Bariloche
Period18/06/2323/06/23

Keywords

  • Cardiac MRI
  • Deep Learning
  • Image Reconstruction
  • Neural Implicit Functions
  • Non-Cartesian MRI
  • k-Space Interpolation

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