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Learning residual motion correction for fast and robust 3D multiparametric MRI

  • Carolin M. Pirkl
  • , Matteo Cencini
  • , Jan W. Kurzawski
  • , Diana Waldmannstetter
  • , Hongwei Li
  • , Anjany Sekuboyina
  • , Sebastian Endt
  • , Luca Peretti
  • , Graziella Donatelli
  • , Rosa Pasquariello
  • , Mauro Costagli
  • , Guido Buonincontri
  • , Michela Tosetti
  • , Marion I. Menzel
  • , Bjoern H. Menze
  • Technical University of Munich
  • GE Healthcare, Germany
  • University of Pisa
  • Fondazione Imago 7
  • SNS and INFN
  • University of Zurich
  • University of Pisa
  • University Hospital
  • University of Genova
  • Ingolstadt

Research output: Contribution to journalArticlepeer-review

18 Scopus citations

Abstract

Voluntary and involuntary patient motion is a major problem for data quality in clinical routine of Magnetic Resonance Imaging (MRI). It has been thoroughly investigated and, yet it still remains unresolved. In quantitative MRI, motion artifacts impair the entire temporal evolution of the magnetization and cause errors in parameter estimation. Here, we present a novel strategy based on residual learning for retrospective motion correction in fast 3D whole-brain multiparametric MRI. We propose a 3D multiscale convolutional neural network (CNN) that learns the non-linear relationship between the motion-affected quantitative parameter maps and the residual error to their motion-free reference. For supervised model training, despite limited data availability, we propose a physics-informed simulation to generate self-contained paired datasets from a priori motion-free data. We evaluate motion-correction performance of the proposed method for the example of 3D Quantitative Transient-state Imaging at 1.5T and 3T. We show the robustness of the motion correction for various motion regimes and demonstrate the generalization capabilities of the residual CNN in terms of real-motion in vivo data of healthy volunteers and clinical patient cases, including pediatric and adult patients with large brain lesions. Our study demonstrates that the proposed motion correction outperforms current state of the art, reliably providing a high, clinically relevant image quality for mild to pronounced patient movements. This has important implications in clinical setups where large amounts of motion affected data must be discarded as they are rendered diagnostically unusable.

Original languageEnglish
Article number102387
JournalMedical Image Analysis
Volume77
DOIs
StatePublished - Apr 2022

Keywords

  • 3D Motion correction
  • Multiparametric MRI
  • Multiscale CNN
  • Residual learning

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