TY - JOUR
T1 - Integrated digital pathology at scale
T2 - A solution for clinical diagnostics and cancer research at a large academic medical center
AU - Schüffler, Peter J.
AU - Geneslaw, Luke
AU - Yarlagadda, D. Vijay K.
AU - Hanna, Matthew G.
AU - Samboy, Jennifer
AU - Stamelos, Evangelos
AU - Vanderbilt, Chad
AU - Philip, John
AU - Jean, Marc Henri
AU - Corsale, Lorraine
AU - Manzo, Allyne
AU - Paramasivam, Neeraj H.G.
AU - Ziegler, John S.
AU - Gao, Jianjiong
AU - Perin, Juan C.
AU - Kim, Young Suk
AU - Bhanot, Umeshkumar K.
AU - Roehrl, Michael H.A.
AU - Ardon, Orly
AU - Chiang, Sarah
AU - Giri, DIlip D.
AU - Sigel, Carlie S.
AU - Tan, Lee K.
AU - Murray, Melissa
AU - Virgo, Christina
AU - England, Christine
AU - Yagi, Yukako
AU - Sirintrapun, S. Joseph
AU - Klimstra, David
AU - Hameed, Meera
AU - Reuter, Victor E.
AU - Fuchs, Thomas J.
N1 - Publisher Copyright:
© 2021 The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association.
PY - 2021/9/1
Y1 - 2021/9/1
N2 - Objective: Broad adoption of digital pathology (DP) is still lacking, and examples for DP connecting diagnostic, research, and educational use cases are missing. We blueprint a holistic DP solution at a large academic medical center ubiquitously integrated into clinical workflows; researchapplications including molecular, genetic, and tissue databases; and educational processes. Materials and Methods: We built a vendor-agnostic, integrated viewer for reviewing, annotating, sharing, and quality assurance of digital slides in a clinical or research context. It is the first homegrown viewer cleared by New York State provisional approval in 2020 for primary diagnosis and remote sign-out during the COVID-19 (coronavirus disease 2019) pandemic. We further introduce an interconnected Honest Broker for BioInformatics Technology (HoBBIT) to systematically compile and share large-scale DP research datasets including anonymized images, redacted pathology reports, and clinical data of patients with consent. Results: The solution has been operationally used over 3 years by 926 pathologists and researchers evaluating 288 903 digital slides. A total of 51% of these were reviewed within 1 month after scanning. Seamless integration of the viewer into 4 hospital systems clearly increases the adoption of DP. HoBBIT directly impacts the translation of knowledge in pathology into effective new health measures, including artificial intelligence-driven detection models for prostate cancer, basal cell carcinoma, and breast cancer metastases, developed and validated on thousands of cases. Conclusions: We highlight major challenges and lessons learned when going digital to provide orientation for other pathologists. Building interconnected solutions will not only increase adoption of DP, but also facilitate next-generation computational pathology at scale for enhanced cancer research.
AB - Objective: Broad adoption of digital pathology (DP) is still lacking, and examples for DP connecting diagnostic, research, and educational use cases are missing. We blueprint a holistic DP solution at a large academic medical center ubiquitously integrated into clinical workflows; researchapplications including molecular, genetic, and tissue databases; and educational processes. Materials and Methods: We built a vendor-agnostic, integrated viewer for reviewing, annotating, sharing, and quality assurance of digital slides in a clinical or research context. It is the first homegrown viewer cleared by New York State provisional approval in 2020 for primary diagnosis and remote sign-out during the COVID-19 (coronavirus disease 2019) pandemic. We further introduce an interconnected Honest Broker for BioInformatics Technology (HoBBIT) to systematically compile and share large-scale DP research datasets including anonymized images, redacted pathology reports, and clinical data of patients with consent. Results: The solution has been operationally used over 3 years by 926 pathologists and researchers evaluating 288 903 digital slides. A total of 51% of these were reviewed within 1 month after scanning. Seamless integration of the viewer into 4 hospital systems clearly increases the adoption of DP. HoBBIT directly impacts the translation of knowledge in pathology into effective new health measures, including artificial intelligence-driven detection models for prostate cancer, basal cell carcinoma, and breast cancer metastases, developed and validated on thousands of cases. Conclusions: We highlight major challenges and lessons learned when going digital to provide orientation for other pathologists. Building interconnected solutions will not only increase adoption of DP, but also facilitate next-generation computational pathology at scale for enhanced cancer research.
KW - artificial intelligence
KW - computational pathology
KW - digital pathology
KW - honest broker, pathology
KW - whole slide imaging
UR - http://www.scopus.com/inward/record.url?scp=85114328858&partnerID=8YFLogxK
U2 - 10.1093/jamia/ocab085
DO - 10.1093/jamia/ocab085
M3 - Article
C2 - 34260720
AN - SCOPUS:85114328858
SN - 1067-5027
VL - 28
SP - 1874
EP - 1884
JO - Journal of the American Medical Informatics Association
JF - Journal of the American Medical Informatics Association
IS - 9
ER -