How granularity issues concern biomedical ontology integration

Stefan Schulz, Martin Boeker, Holger Stenzhorn

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

8 Scopus citations

Abstract

The application of upper ontologies has been repeatedly advocated for supporting interoperability between domain ontologies in order to facilitate shared data use both within and across disciplines. We have developed BioTop as a top-domain ontology to integrate more specialized ontologies in the biomolecular and biomedical domain. In this paper, we report on concrete integration problems of this ontology with the domain-independent Basic Formal Ontology (BFO) concerning the issue of fiat and aggregated objects in the context of different granularity levels. We conclude that the third BFO level must be ignored in order not to obviate cross-granularity integration.

Original languageEnglish
Title of host publicationStudies in Health Technology and Informatics
PublisherIOS Press
Pages863-868
Number of pages6
ISBN (Print)9781586038649
StatePublished - 2008
Externally publishedYes

Publication series

NameStudies in Health Technology and Informatics
Volume136
ISSN (Print)0926-9630
ISSN (Electronic)1879-8365

Keywords

  • Domain ontology
  • Formal ontology

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