TY - GEN
T1 - GAT-based Concentration Prediction for Random Microfluidic Mixers with Multiple Input Flow Rates
AU - Ji, Weiqing
AU - Yao, Hailong
AU - Ho, Tsung Yi
AU - Schlichtmann, Ulf
AU - Yin, Xia
N1 - Publisher Copyright:
© 2023 ACM.
PY - 2023/6/5
Y1 - 2023/6/5
N2 - Microfluidic biochips have emerged with significant promise and versatility in automating a variety of biochemical protocols. Accurate preparation of fluid samples with microfluidic mixers is an essential component of these protocols, where concentration prediction and generation are critical. Recently, machine learning models have been adopted in concentration prediction, which demonstrate great potential in enhancing the efficiency and scalability over the traditional finite element analysis (FEA) methods. However, the state-of-the-art machine learning-based method can only predict the concentration of microfluidic mixers with fixed input flow rates, but suffers poor prediction accuracy for multiple input flow rates. To address this issue, this paper proposes a new concentration prediction method based on the graph attention networks (GAT). By modeling each channel of the mixer as a graph node in a GAT, the proposed method efficiently and accurately predicts the generated concentration of random microfluidic mixers with multiple input flow rates. Experimental results show that compared with the state-of-the-art method, the proposed GAT-based simulation method obtains a reduction of 85% in terms of errors of predicted concentration, which validates the effectiveness of the proposed GAT model.
AB - Microfluidic biochips have emerged with significant promise and versatility in automating a variety of biochemical protocols. Accurate preparation of fluid samples with microfluidic mixers is an essential component of these protocols, where concentration prediction and generation are critical. Recently, machine learning models have been adopted in concentration prediction, which demonstrate great potential in enhancing the efficiency and scalability over the traditional finite element analysis (FEA) methods. However, the state-of-the-art machine learning-based method can only predict the concentration of microfluidic mixers with fixed input flow rates, but suffers poor prediction accuracy for multiple input flow rates. To address this issue, this paper proposes a new concentration prediction method based on the graph attention networks (GAT). By modeling each channel of the mixer as a graph node in a GAT, the proposed method efficiently and accurately predicts the generated concentration of random microfluidic mixers with multiple input flow rates. Experimental results show that compared with the state-of-the-art method, the proposed GAT-based simulation method obtains a reduction of 85% in terms of errors of predicted concentration, which validates the effectiveness of the proposed GAT model.
KW - graph attention network
KW - microfluidic biochips
KW - sample preparation
UR - https://www.scopus.com/pages/publications/85163196989
U2 - 10.1145/3583781.3590251
DO - 10.1145/3583781.3590251
M3 - Conference contribution
AN - SCOPUS:85163196989
T3 - Proceedings of the ACM Great Lakes Symposium on VLSI, GLSVLSI
SP - 483
EP - 488
BT - GLSVLSI 2023 - Proceedings of the Great Lakes Symposium on VLSI 2023
PB - Association for Computing Machinery
T2 - 33rd Great Lakes Symposium on VLSI, GLSVLSI 2023
Y2 - 5 June 2023 through 7 June 2023
ER -