From plant genomes to phenotypes

Marie Bolger; Rainer Schwacke; Heidrun Gundlach; Thomas Schmutzer; Jinbo Chen; Daniel Arend; Markus Oppermann; Stephan Weise; Matthias Lange; Fabio Fiorani; Manuel Spannagl; Uwe Scholz; Klaus Mayer; Björn Usadel

doi:10.1016/j.jbiotec.2017.06.003

From plant genomes to phenotypes

Marie Bolger, Rainer Schwacke, Heidrun Gundlach, Thomas Schmutzer, Jinbo Chen, Daniel Arend, Markus Oppermann, Stephan Weise, Matthias Lange, Fabio Fiorani, Manuel Spannagl, Uwe Scholz, Klaus Mayer, Björn Usadel

Research output: Contribution to journal › Review article › peer-review

30 Scopus citations

Abstract

Recent advances in sequencing technologies have greatly accelerated the rate of plant genome and applied breeding research. Despite this advancing trend, plant genomes continue to present numerous difficulties to the standard tools and pipelines not only for genome assembly but also gene annotation and downstream analysis. Here we give a perspective on tools, resources and services necessary to assemble and analyze plant genomes and link them to plant phenotypes.

Original language	English
Pages (from-to)	46-52
Number of pages	7
Journal	Journal of Biotechnology
Volume	261
DOIs	https://doi.org/10.1016/j.jbiotec.2017.06.003
State	Published - 10 Nov 2017
Externally published	Yes

Keywords

Phenotyping
Plant bioinformatics
Plant genome annotation
Plant genomes

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10.1016/j.jbiotec.2017.06.003

Cite this

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title = "From plant genomes to phenotypes",

abstract = "Recent advances in sequencing technologies have greatly accelerated the rate of plant genome and applied breeding research. Despite this advancing trend, plant genomes continue to present numerous difficulties to the standard tools and pipelines not only for genome assembly but also gene annotation and downstream analysis. Here we give a perspective on tools, resources and services necessary to assemble and analyze plant genomes and link them to plant phenotypes.",

keywords = "Phenotyping, Plant bioinformatics, Plant genome annotation, Plant genomes",

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doi = "10.1016/j.jbiotec.2017.06.003",

language = "English",

volume = "261",

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T1 - From plant genomes to phenotypes

AU - Bolger, Marie

AU - Schwacke, Rainer

AU - Gundlach, Heidrun

AU - Schmutzer, Thomas

AU - Chen, Jinbo

AU - Arend, Daniel

AU - Oppermann, Markus

AU - Weise, Stephan

AU - Lange, Matthias

AU - Fiorani, Fabio

AU - Spannagl, Manuel

AU - Scholz, Uwe

AU - Mayer, Klaus

AU - Usadel, Björn

PY - 2017/11/10

Y1 - 2017/11/10

N2 - Recent advances in sequencing technologies have greatly accelerated the rate of plant genome and applied breeding research. Despite this advancing trend, plant genomes continue to present numerous difficulties to the standard tools and pipelines not only for genome assembly but also gene annotation and downstream analysis. Here we give a perspective on tools, resources and services necessary to assemble and analyze plant genomes and link them to plant phenotypes.

AB - Recent advances in sequencing technologies have greatly accelerated the rate of plant genome and applied breeding research. Despite this advancing trend, plant genomes continue to present numerous difficulties to the standard tools and pipelines not only for genome assembly but also gene annotation and downstream analysis. Here we give a perspective on tools, resources and services necessary to assemble and analyze plant genomes and link them to plant phenotypes.

KW - Phenotyping

KW - Plant bioinformatics

KW - Plant genome annotation

KW - Plant genomes

UR - http://www.scopus.com/inward/record.url?scp=85020441822&partnerID=8YFLogxK

U2 - 10.1016/j.jbiotec.2017.06.003

DO - 10.1016/j.jbiotec.2017.06.003

M3 - Review article

C2 - 28602791

AN - SCOPUS:85020441822

SN - 0168-1656

VL - 261

SP - 46

EP - 52

JO - Journal of Biotechnology

JF - Journal of Biotechnology

ER -

From plant genomes to phenotypes

Abstract

Keywords

Access to Document

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