From plant genomes to phenotypes

Marie Bolger, Rainer Schwacke, Heidrun Gundlach, Thomas Schmutzer, Jinbo Chen, Daniel Arend, Markus Oppermann, Stephan Weise, Matthias Lange, Fabio Fiorani, Manuel Spannagl, Uwe Scholz, Klaus Mayer, Björn Usadel

Research output: Contribution to journalReview articlepeer-review

26 Scopus citations

Abstract

Recent advances in sequencing technologies have greatly accelerated the rate of plant genome and applied breeding research. Despite this advancing trend, plant genomes continue to present numerous difficulties to the standard tools and pipelines not only for genome assembly but also gene annotation and downstream analysis. Here we give a perspective on tools, resources and services necessary to assemble and analyze plant genomes and link them to plant phenotypes.

Original languageEnglish
Pages (from-to)46-52
Number of pages7
JournalJournal of Biotechnology
Volume261
DOIs
StatePublished - 10 Nov 2017
Externally publishedYes

Keywords

  • Phenotyping
  • Plant bioinformatics
  • Plant genome annotation
  • Plant genomes

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