Fast training of support vector machines for survival analysis

Sebastian Pölsterl, Nassir Navab, Amin Katouzian

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

74 Scopus citations

Abstract

Survival analysis is a commonly used technique to identify important predictors of adverse events and develop guidelines for patient’s treatment in medical research. When applied to large amounts of patient data, efficient optimization routines become a necessity. We propose efficient training algorithms for three kinds of linear survival support vector machines: 1) ranking-based, 2) regression-based, and 3) combined ranking and regression. We perform optimization in the primal using truncated Newton optimization and use order statistic trees to lower computational costs of training. We employ the same optimization technique and extend it for non-linear models too. Our results demonstrate the superiority of our proposed optimization scheme over existing training algorithms, which fail due to their inherently high time and space complexities when applied to large datasets. We validate the proposed survival models on 6 real-world datasets, and show that pure ranking-based approaches outperform regression and hybrid models.

Original languageEnglish
Title of host publicationMachine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2015
EditorsVitor Santos Costa, Carlos Soares, Annalisa Appice, Annalisa Appice, Pedro Pereira Rodrigues, Vitor Santos Costa, Carlos Soares, João Gama, Alípio Jorge, Pedro Pereira Rodrigues, João Gama, Vitor Santos Costa, Alípio Jorge, Annalisa Appice, Pedro Pereira Rodrigues, João Gama, Annalisa Appice, Carlos Soares, Alípio Jorge, João Gama, Pedro Pereira Rodrigues, Vitor Santos Costa, Carlos Soares, Alípio Jorge
PublisherSpringer Verlag
Pages243-259
Number of pages17
ISBN (Print)9783319235240, 9783319235240, 9783319235240, 9783319235240
DOIs
StatePublished - 2015
EventEuropean Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, ECML PKDD 2015 - Porto, Portugal
Duration: 7 Sep 201511 Sep 2015

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume9285
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

ConferenceEuropean Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, ECML PKDD 2015
Country/TerritoryPortugal
CityPorto
Period7/09/1511/09/15

Keywords

  • Optimization
  • Support vector machine
  • Survival analysis

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