Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle

Keyphrases

• Sequence Variants 100%
• Causal Variants 100%
• Genotype 100%
• Variant Detection 100%
• Cattle 100%
• Variant Genotypes 100%
• FImpute 36%
• Association Study 18%
• Whole Genome Sequencing 18%
• Quantitative Trait Loci 18%
• Causal mutation 18%
• Segmental Duplication 18%
• Allele Dosage 18%
• Multibreed 18%
• Best Guess 18%
• Single nucleotide Polymorphism 9%
• In Silico 9%
• Population-based 9%
• Chromosome 14 9%
• Minor Allele Frequency 9%
• Genotyping Array 9%
• Illumina 9%
• Large Cohort 9%
• Low-frequency Variants 9%
• Shared Set 9%
• Computing Cost 9%
• Milk Fat Composition 9%
• Explanatory Variables 9%
• Holstein Cows 9%
• Genomic Analysis 9%
• Fleckvieh 9%
• Chromosome 20 9%
• Polymorphic Site 9%
• Bovine Genome 9%
• DGAT1 Gene 9%
• BovineHD 9%
• Missing Genotypes 9%
• Imputation Strategy 9%
• GHR Gene 9%

Biochemistry, Genetics and Molecular Biology

• Breed 100%
• Quantitative Trait Locus 66%
• Low Copy Repeats 66%
• Allele 66%
• Genotyping 33%
• Single-Nucleotide Polymorphism 33%
• Minor Allele Frequency 33%
• Chromosome 14 33%
• Fleckvieh Cattle 33%
• Holstein Cattle 33%
• Chromosome 20 33%
• Genomics 33%