TY - JOUR
T1 - Dilution of candidates
T2 - The case of iron-related genes in restless legs syndrome
AU - Oexle, Konrad
AU - Schormair, Barbara
AU - Ried, Janina S.
AU - Czamara, Darina
AU - Heim, Katharina
AU - Frauscher, Birgit
AU - Högl, Birgit
AU - Trenkwalder, Claudia
AU - Martin Fiedler, G.
AU - Thiery, Joachim
AU - Lichtner, Peter
AU - Prokisch, Holger
AU - Specht, Michael
AU - Müller-Myhsok, Bertram
AU - Döring, Angela
AU - Gieger, Christian
AU - Peters, Annette
AU - Wichmann, H. Erich
AU - Meitinger, Thomas
AU - Winkelmann, Juliane
PY - 2013/4
Y1 - 2013/4
N2 - Restless legs syndrome (RLS) is a common multifactorial disease. Some genetic risk factors have been identified. RLS susceptibility also has been related to iron. We therefore asked whether known iron-related genes are candidates for association with RLS and, vice versa, whether known RLS-associated loci influence iron parameters in serum. RLS/control samples (n=954/1814 in the discovery step, 735/736 in replication 1, and 736/735 in replication 2) were tested for association with SNPs located within 4 Mb intervals surrounding each gene from a list of 111 iron-related genes using a discovery threshold of P=5 × 10-4. Two population cohorts (KORA F3 and F4 with together n=3447) were tested for association of six known RLS loci with iron, ferritin, transferrin, transferrin-saturation, and soluble transferrin receptor. Results were negative. None of the candidate SNPs at the iron-related gene loci was confirmed significantly. An intronic SNP, rs2576036, of KATNAL2 at 18q21.1 was significant in the first (P=0.00085) but not in the second replication step (joint nominal P-value=0.044). Especially, rs1800652 (C282Y) in the HFE gene did not associate with RLS. Moreover, SNPs at the known RLS loci did not significantly affect serum iron parameters in the KORA cohorts. In conclusion, the correlation between RLS and iron parameters in serum may be weaker than assumed. Moreover, in a general power analysis, we show that genetic effects are diluted if they are transmitted via an intermediate trait to an end-phenotype. Sample size formulas are provided for small effect sizes.
AB - Restless legs syndrome (RLS) is a common multifactorial disease. Some genetic risk factors have been identified. RLS susceptibility also has been related to iron. We therefore asked whether known iron-related genes are candidates for association with RLS and, vice versa, whether known RLS-associated loci influence iron parameters in serum. RLS/control samples (n=954/1814 in the discovery step, 735/736 in replication 1, and 736/735 in replication 2) were tested for association with SNPs located within 4 Mb intervals surrounding each gene from a list of 111 iron-related genes using a discovery threshold of P=5 × 10-4. Two population cohorts (KORA F3 and F4 with together n=3447) were tested for association of six known RLS loci with iron, ferritin, transferrin, transferrin-saturation, and soluble transferrin receptor. Results were negative. None of the candidate SNPs at the iron-related gene loci was confirmed significantly. An intronic SNP, rs2576036, of KATNAL2 at 18q21.1 was significant in the first (P=0.00085) but not in the second replication step (joint nominal P-value=0.044). Especially, rs1800652 (C282Y) in the HFE gene did not associate with RLS. Moreover, SNPs at the known RLS loci did not significantly affect serum iron parameters in the KORA cohorts. In conclusion, the correlation between RLS and iron parameters in serum may be weaker than assumed. Moreover, in a general power analysis, we show that genetic effects are diluted if they are transmitted via an intermediate trait to an end-phenotype. Sample size formulas are provided for small effect sizes.
KW - MEIS1 haplotype
KW - iron parameters
KW - linear regression
KW - logistic regression
KW - power calculation
KW - restless legs syndrome
UR - http://www.scopus.com/inward/record.url?scp=84875051815&partnerID=8YFLogxK
U2 - 10.1038/ejhg.2012.193
DO - 10.1038/ejhg.2012.193
M3 - Article
C2 - 22929029
AN - SCOPUS:84875051815
SN - 1018-4813
VL - 21
SP - 410
EP - 414
JO - European Journal of Human Genetics
JF - European Journal of Human Genetics
IS - 4
ER -