Deep learning: new computational modelling techniques for genomics

Gökcen Eraslan, Žiga Avsec, Julien Gagneur, Fabian J. Theis

Research output: Contribution to journalReview articlepeer-review

775 Scopus citations

Abstract

As a data-driven science, genomics largely utilizes machine learning to capture dependencies in data and derive novel biological hypotheses. However, the ability to extract new insights from the exponentially increasing volume of genomics data requires more expressive machine learning models. By effectively leveraging large data sets, deep learning has transformed fields such as computer vision and natural language processing. Now, it is becoming the method of choice for many genomics modelling tasks, including predicting the impact of genetic variation on gene regulatory mechanisms such as DNA accessibility and splicing.

Original languageEnglish
Pages (from-to)389-403
Number of pages15
JournalNature Reviews Genetics
Volume20
Issue number7
DOIs
StatePublished - 1 Jul 2019

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