TY - JOUR
T1 - Decomposition of reaction networks
T2 - The initial phase of the permanganate/oxalic acid reaction
AU - Haus, Utz Uwe
AU - Hemmecke, Raymond
N1 - Funding Information:
corresponding to Figs. 1 and 2. Cluster 0 contains the initial state, cluster 8 contains the final state. There are three paths from cluster 0 to cluster 8. The arcs between clusters correspond to critical elementary reaction. For example, there is only one such reaction connecting states from cluster 0 to states from cluster 1: H2C2O4 + MnO4− → MnO2 + CO2 + CO2− + H2O2 Acknowledgments The first author was supported by the Magdeburg Center for Systems Biology funded by the FORSYS initiative of the German Ministry for Education and Research.
PY - 2010
Y1 - 2010
N2 - The determination of all chemical reaction networks composed of elementary reactions for a given net chemical reaction is one of the fundamental problems in chemistry, since the decomposition elucidates the reaction mechanism. It is essential in a wide range of applications: from the derivation of rate laws in physical chemistry to the design of large-scale reactors in process engineering where presence of unexpected side products can disturb operation. As an example we consider the well-known permanganate/oxalic acid reaction. We characterize all intermediate substances that can in principle act (auto-)catalytic, list all possible additional intermediate substances that would suffice to start the reaction without assuming presence of any autocatalyst. In particular, we propose for the first time a minimal network in which the well-known autocatalyst Mn2+ is produced. To derive our results we present an automatic method to determine whether a net chemical reaction can be explained by some reaction network with a given list of intermediate substances, how to generate all such networks, and how to suggest more intermediate substances if no network with the initially given substances exists.
AB - The determination of all chemical reaction networks composed of elementary reactions for a given net chemical reaction is one of the fundamental problems in chemistry, since the decomposition elucidates the reaction mechanism. It is essential in a wide range of applications: from the derivation of rate laws in physical chemistry to the design of large-scale reactors in process engineering where presence of unexpected side products can disturb operation. As an example we consider the well-known permanganate/oxalic acid reaction. We characterize all intermediate substances that can in principle act (auto-)catalytic, list all possible additional intermediate substances that would suffice to start the reaction without assuming presence of any autocatalyst. In particular, we propose for the first time a minimal network in which the well-known autocatalyst Mn2+ is produced. To derive our results we present an automatic method to determine whether a net chemical reaction can be explained by some reaction network with a given list of intermediate substances, how to generate all such networks, and how to suggest more intermediate substances if no network with the initially given substances exists.
KW - Elementary reactions
KW - Network decomposition
KW - Reaction mechanisms
KW - Reaction networks
UR - http://www.scopus.com/inward/record.url?scp=77954455774&partnerID=8YFLogxK
U2 - 10.1007/s10910-010-9670-x
DO - 10.1007/s10910-010-9670-x
M3 - Article
AN - SCOPUS:77954455774
SN - 0259-9791
VL - 48
SP - 305
EP - 312
JO - Journal of Mathematical Chemistry
JF - Journal of Mathematical Chemistry
IS - 2
ER -