DBDIpy: a Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry

Leopold Weidner, Daniel Hemmler, Michael Rychlik, Philippe Schmitt-Kopplin

Research output: Contribution to journalArticlepeer-review

Abstract

Motivation: Plasma ionization is rapidly gaining popularity for mass spectrometry (MS)-based studies of volatiles and aerosols. However, data from plasma ionization are delicate to interpret as competing ionization pathways in the plasma create numerous ion species. There is no tool for detection of adducts and in-source fragments from plasma ionization data yet, which makes data evaluation ambiguous. Summary: We developed DBDIpy, a Python library for processing and formal analysis of untargeted, time-sensitive plasma ionization MS datasets. Its core functionality lies in the identification of in-source fragments and identification of rivaling ionization pathways of the same analytes in time-sensitive datasets. It further contains elementary functions for processing of untargeted metabolomics data and interfaces to an established ecosystem for analysis of MS data in Python.

Original languageEnglish
Article numberbtad088
JournalBioinformatics
Volume39
Issue number2
DOIs
StatePublished - 1 Feb 2023

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