TY - JOUR
T1 - Conserved host-pathogen PPIs
T2 - Globally conserved inter-species bacterial PPIs based conserved host-pathogen interactome derived novel target in C. pseudotuberculosis, C. diphtheriae, M. tuberculosis, C. ulcerans, Y. pestis, and E. coli targeted by Piper betel compounds
AU - Barh, Debmalya
AU - Gupta, Krishnakant
AU - Jain, Neha
AU - Khatri, Gourav
AU - León-Sicairos, Nidia
AU - Canizalez-Roman, Adrian
AU - Tiwari, Sandeep
AU - Verma, Ankit
AU - Rahangdale, Sachin
AU - Shah Hassan, Syed
AU - Rodrigues Dos Santos, Anderson
AU - Ali, Amjad
AU - Carlos Guimarães, Luis
AU - Thiago Jucá Ramos, Rommel
AU - Devarapalli, Pratap
AU - Barve, Neha
AU - Bakhtiar, Marriam
AU - Kumavath, Ranjith
AU - Ghosh, Preetam
AU - Miyoshi, Anderson
AU - Silva, Artur
AU - Kumar, Anil
AU - Narayan Misra, Amarendra
AU - Blum, Kenneth
AU - Baumbach, Jan
AU - Azevedo, Vasco
PY - 2013/3
Y1 - 2013/3
N2 - Although attempts have been made to unveil protein-protein and host-pathogen interactions based on molecular insights of important biological events and pathogenesis in various organisms, these efforts have not yet been reported in Corynebacterium pseudotuberculosis (Cp), the causative agent of Caseous Lymphadenitis (CLA). In this study, we used computational approaches to develop common conserved intra-species protein-protein interaction (PPI) networks first time for four Cp strains (Cp FRC41, Cp 316, Cp 3/99-5, and Cp P54B96) followed by development of a common conserved inter-species bacterial PPI using conserved proteins in multiple pathogens (Y. pestis, M. tuberculosis, C. diphtheriae, C. ulcerans, E. coli, and all four Cp strains) and E. Coli based experimentally validated PPI data. Furthermore, the interacting proteins in the common conserved inter-species bacterial PPI were used to generate a conserved host-pathogen interaction (HP-PPI) network considering human, goat, sheep, bovine, and horse as hosts. The HP-PPI network was validated, and acetate kinase (Ack) was identified as a novel broad spectrum target. Ceftiofur, penicillin, and two natural compounds derived from Piper betel were predicted to inhibit Ack activity. One of these Piper betel compounds found to inhibit E. coli O157:H7 growth similar to penicillin. The target specificity of these betel compounds, their effects on other studied pathogens, and other in silico results are currently being validated and the results are promising.
AB - Although attempts have been made to unveil protein-protein and host-pathogen interactions based on molecular insights of important biological events and pathogenesis in various organisms, these efforts have not yet been reported in Corynebacterium pseudotuberculosis (Cp), the causative agent of Caseous Lymphadenitis (CLA). In this study, we used computational approaches to develop common conserved intra-species protein-protein interaction (PPI) networks first time for four Cp strains (Cp FRC41, Cp 316, Cp 3/99-5, and Cp P54B96) followed by development of a common conserved inter-species bacterial PPI using conserved proteins in multiple pathogens (Y. pestis, M. tuberculosis, C. diphtheriae, C. ulcerans, E. coli, and all four Cp strains) and E. Coli based experimentally validated PPI data. Furthermore, the interacting proteins in the common conserved inter-species bacterial PPI were used to generate a conserved host-pathogen interaction (HP-PPI) network considering human, goat, sheep, bovine, and horse as hosts. The HP-PPI network was validated, and acetate kinase (Ack) was identified as a novel broad spectrum target. Ceftiofur, penicillin, and two natural compounds derived from Piper betel were predicted to inhibit Ack activity. One of these Piper betel compounds found to inhibit E. coli O157:H7 growth similar to penicillin. The target specificity of these betel compounds, their effects on other studied pathogens, and other in silico results are currently being validated and the results are promising.
UR - http://www.scopus.com/inward/record.url?scp=84874807298&partnerID=8YFLogxK
U2 - 10.1039/c2ib20206a
DO - 10.1039/c2ib20206a
M3 - Article
C2 - 23288366
AN - SCOPUS:84874807298
SN - 1757-9694
VL - 5
SP - 495
EP - 509
JO - Integrative Biology (United Kingdom)
JF - Integrative Biology (United Kingdom)
IS - 3
ER -