Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives

Thomas Schmutzer; Marie E. Bolger; Stephen Rudd; Jinbo Chen; Heidrun Gundlach; Daniel Arend; Markus Oppermann; Stephan Weise; Matthias Lange; Manuel Spannagl; Björn Usadel; Klaus F.X. Mayer; Uwe Scholz

doi:10.1016/j.jbiotec.2017.07.006

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives

Thomas Schmutzer
, Marie E. Bolger
, Stephen Rudd
, Jinbo Chen
, Heidrun Gundlach
, Daniel Arend
, Markus Oppermann
, Stephan Weise
, Matthias Lange
, Manuel Spannagl
, Björn Usadel
, Klaus F.X. Mayer
, Uwe Scholz

Life Sciences

Leibniz Institute of Plant Genetics and Crop Plant Research
Forschungszentrum Jülich (FZJ)
Helmholtz Zentrum München German Research Center for Environmental Health

Research output: Contribution to journal › Review article › peer-review

10 Scopus citations

Abstract

Plant genetic resources are a substantial opportunity for plant breeding, preservation and maintenance of biological diversity. As part of the German Network for Bioinformatics Infrastructure (de.NBI) the German Crop BioGreenformatics Network (GCBN) focuses mainly on crop plants and provides both data and software infrastructure which are tailored to the needs of the plant research community. Our mission and key objectives include: (1) provision of transparent access to germplasm seeds, (2) the delivery of improved workflows for plant gene annotation, and (3) implementation of bioinformatics services that link genotypes and phenotypes. This review introduces the GCBN's spectrum of web-services and integrated data resources that address common research problems in the plant genomics community.

Original language	English
Pages (from-to)	37-45
Number of pages	9
Journal	Journal of Biotechnology
Volume	261
DOIs	https://doi.org/10.1016/j.jbiotec.2017.07.006
State	Published - 10 Nov 2017

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 2 Zero Hunger
SDG 15 Life on Land

Keywords

Plant bioinformatics
Plant data publication
Plant genetic resources
Plant genomics
Plant phenomics

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10.1016/j.jbiotec.2017.07.006

Cite this

Schmutzer, T., Bolger, M. E., Rudd, S., Chen, J., Gundlach, H., Arend, D., Oppermann, M., Weise, S., Lange, M., Spannagl, M., Usadel, B., Mayer, K. F. X., & Scholz, U. (2017). Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives. Journal of Biotechnology, 261, 37-45. https://doi.org/10.1016/j.jbiotec.2017.07.006

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title = "Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives",

abstract = "Plant genetic resources are a substantial opportunity for plant breeding, preservation and maintenance of biological diversity. As part of the German Network for Bioinformatics Infrastructure (de.NBI) the German Crop BioGreenformatics Network (GCBN) focuses mainly on crop plants and provides both data and software infrastructure which are tailored to the needs of the plant research community. Our mission and key objectives include: (1) provision of transparent access to germplasm seeds, (2) the delivery of improved workflows for plant gene annotation, and (3) implementation of bioinformatics services that link genotypes and phenotypes. This review introduces the GCBN's spectrum of web-services and integrated data resources that address common research problems in the plant genomics community.",

keywords = "Plant bioinformatics, Plant data publication, Plant genetic resources, Plant genomics, Plant phenomics",

author = "Thomas Schmutzer and Bolger, \{Marie E.\} and Stephen Rudd and Jinbo Chen and Heidrun Gundlach and Daniel Arend and Markus Oppermann and Stephan Weise and Matthias Lange and Manuel Spannagl and Bj{\"o}rn Usadel and Mayer, \{Klaus F.X.\} and Uwe Scholz",

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month = nov,

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doi = "10.1016/j.jbiotec.2017.07.006",

language = "English",

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Schmutzer, T, Bolger, ME, Rudd, S, Chen, J, Gundlach, H, Arend, D, Oppermann, M, Weise, S, Lange, M, Spannagl, M, Usadel, B, Mayer, KFX & Scholz, U 2017, 'Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives', Journal of Biotechnology, vol. 261, pp. 37-45. https://doi.org/10.1016/j.jbiotec.2017.07.006

TY - JOUR

T1 - Bioinformatics in the plant genomic and phenomic domain

T2 - The German contribution to resources, services and perspectives

AU - Schmutzer, Thomas

AU - Bolger, Marie E.

AU - Rudd, Stephen

AU - Chen, Jinbo

AU - Gundlach, Heidrun

AU - Arend, Daniel

AU - Oppermann, Markus

AU - Weise, Stephan

AU - Lange, Matthias

AU - Spannagl, Manuel

AU - Usadel, Björn

AU - Mayer, Klaus F.X.

AU - Scholz, Uwe

PY - 2017/11/10

Y1 - 2017/11/10

N2 - Plant genetic resources are a substantial opportunity for plant breeding, preservation and maintenance of biological diversity. As part of the German Network for Bioinformatics Infrastructure (de.NBI) the German Crop BioGreenformatics Network (GCBN) focuses mainly on crop plants and provides both data and software infrastructure which are tailored to the needs of the plant research community. Our mission and key objectives include: (1) provision of transparent access to germplasm seeds, (2) the delivery of improved workflows for plant gene annotation, and (3) implementation of bioinformatics services that link genotypes and phenotypes. This review introduces the GCBN's spectrum of web-services and integrated data resources that address common research problems in the plant genomics community.

AB - Plant genetic resources are a substantial opportunity for plant breeding, preservation and maintenance of biological diversity. As part of the German Network for Bioinformatics Infrastructure (de.NBI) the German Crop BioGreenformatics Network (GCBN) focuses mainly on crop plants and provides both data and software infrastructure which are tailored to the needs of the plant research community. Our mission and key objectives include: (1) provision of transparent access to germplasm seeds, (2) the delivery of improved workflows for plant gene annotation, and (3) implementation of bioinformatics services that link genotypes and phenotypes. This review introduces the GCBN's spectrum of web-services and integrated data resources that address common research problems in the plant genomics community.

KW - Plant bioinformatics

KW - Plant data publication

KW - Plant genetic resources

KW - Plant genomics

KW - Plant phenomics

UR - https://www.scopus.com/pages/publications/85024396663

U2 - 10.1016/j.jbiotec.2017.07.006

DO - 10.1016/j.jbiotec.2017.07.006

M3 - Review article

C2 - 28698099

AN - SCOPUS:85024396663

SN - 0168-1656

VL - 261

SP - 37

EP - 45

JO - Journal of Biotechnology

JF - Journal of Biotechnology

ER -

Bioinformatics in the plant genomic and phenomic domain: The German contribution to resources, services and perspectives

Abstract

UN SDGs

Keywords

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