Binding of the bacteriophage P22 N-peptide to the boxB RNA motif studied by molecular dynamics simulations

Keyphrases

• Molecular Dynamics Simulation 100%
• RNA Motif 100%
• N-peptide 100%
• Bacteriophage P22 100%
• Bound Form 50%
• Bound Water Molecules 50%
• Binding Energy 25%
• Interaction Partner 25%
• Complex Formation 25%
• Helix 25%
• Unfolding Method 25%
• Electrostatic Interaction 25%
• Energy Contribution 25%
• Electrostatic Field 25%
• Amino Acid Substitution 25%
• Free Energy Change 25%
• Exergetic Analysis 25%
• Binding Pocket 25%
• Cellular Processes 25%
• Conformational Adaptation 25%
• Binding Interface 25%
• Bacteriophage 25%
• Energetic Contribution 25%
• RNA Binding 25%
• N Protein 25%
• RNA Molecules 25%
• RNA-protein Interaction 25%
• RNA Stem-loop 25%
• Arginine-rich Motif 25%
• Strongly Bound Water 25%
• Salt Dependence 25%
• RNA Interface 25%
• Folding Transitions 25%
• RNA Complexes 25%
• Association Process 25%

Biochemistry, Genetics and Molecular Biology

• RNA 100%
• Enterobacteria Phage P22 100%
• Energy Transfer 28%
• Dynamics 14%
• N-Terminus 14%
• Static Electricity 14%
• RNA-binding Protein 14%
• Complex Formation 14%
• RNA Binding 14%
• Binding Energy 14%
• Amino Acid Substitution 14%
• Arginine 14%
• G Protein 14%
• Bacteriophage 14%