Automatic segmentation of pediatric brain MRIs using a maximum probability pediatric atlas

Ioannis S. Gousias, Alexander Hammers, Serena J. Counsell, A. David Edwards, Daniel Rueckert

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

5 Scopus citations

Abstract

Automatic anatomical segmentation of pediatric brain MR data sets can be pursued with the use of registration algorithms when segmentation priors (atlases) are in hand. We investigated the performance of a maximum probability pediatric atlas (MPPA), template based registration and label propagation. The MPPA was created from the 33 pediatric data sets, available through www.brain-development.org. We evaluated the performance of the MPPA comparing with manual segmentations by means of the Dice overlap coefficient. Dice values, averaged across representative regions, were 0.90 ± 0.03 for the hippocampus, 0.92 ± 0.01 for the caudate nucleus and 0.92 ± 0.02 for the pre-central gyrus. Segmentations of 36 further unsegmented target 3T images (1-year-olds and 2-year-olds) yielded visibly high-quality results. This registration approach allows the rapid construction of automatically labeled pediatric brain atlases in a single registration step.

Original languageEnglish
Title of host publicationIST 2012 - 2012 IEEE International Conference on Imaging Systems and Techniques, Proceedings
Pages95-100
Number of pages6
DOIs
StatePublished - 2012
Externally publishedYes
Event2012 IEEE International Conference on Imaging Systems and Techniques, IST 2012 - Manchester, United Kingdom
Duration: 16 Jul 201217 Jul 2012

Publication series

NameIST 2012 - 2012 IEEE International Conference on Imaging Systems and Techniques, Proceedings

Conference

Conference2012 IEEE International Conference on Imaging Systems and Techniques, IST 2012
Country/TerritoryUnited Kingdom
CityManchester
Period16/07/1217/07/12

Keywords

  • Pediatric brain atlasing
  • brain atlases
  • brain segmentation
  • non-rigid registration
  • parameters
  • priors
  • validation

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