TY - JOUR
T1 - An approximative approach for single cell spatial modeling of quorum sensing
AU - Matur, Meltem Gölgeli
AU - Müller, Johannes
AU - Kuttler, Christina
AU - Hense, Burkhard A.
N1 - Publisher Copyright:
© 2015 Mary Ann Liebert, Inc.
PY - 2015/3/1
Y1 - 2015/3/1
N2 - Quorum sensing, a special kind of cell-cell communication, has originally been described for well-mixed homogeneous bacterial cultures. However, recent perception supports its ecological relevance for spatially heterogeneous distributed cells, like colonies and biofilms. New experimental techniques allow for single cell analysis under these conditions, which is crucial to understanding the effect of chemical gradients and intercell variations. Based on a reaction-diffusion system, we develop a method that drastically reduces the computational complexity of the model. In comparison to similar former approaches, handling and scaling is much easier. Via a suitable scaling, this approach leads to approximative algebraic equations for the stationary case. This approach can be easily used for numerical situations.
AB - Quorum sensing, a special kind of cell-cell communication, has originally been described for well-mixed homogeneous bacterial cultures. However, recent perception supports its ecological relevance for spatially heterogeneous distributed cells, like colonies and biofilms. New experimental techniques allow for single cell analysis under these conditions, which is crucial to understanding the effect of chemical gradients and intercell variations. Based on a reaction-diffusion system, we develop a method that drastically reduces the computational complexity of the model. In comparison to similar former approaches, handling and scaling is much easier. Via a suitable scaling, this approach leads to approximative algebraic equations for the stationary case. This approach can be easily used for numerical situations.
KW - algorithms
KW - computational molecular biology
KW - evolution
UR - http://www.scopus.com/inward/record.url?scp=84924756677&partnerID=8YFLogxK
U2 - 10.1089/cmb.2014.0198
DO - 10.1089/cmb.2014.0198
M3 - Article
C2 - 25360714
AN - SCOPUS:84924756677
SN - 1066-5277
VL - 22
SP - 227
EP - 235
JO - Journal of computational biology : a journal of computational molecular cell biology
JF - Journal of computational biology : a journal of computational molecular cell biology
IS - 3
ER -