Adaptive resolution simulation of MARTINI solvents

Julija Zavadlav, Manuel N. Melo, Ana V. Cunha, Alex H. De Vries, Siewert J. Marrink, Matej Praprotnik

Research output: Contribution to journalArticlepeer-review

47 Scopus citations

Abstract

We present adaptive resolution molecular dynamics simulations of aqueous and apolar solvents using coarse-grained molecular models that are compatible with the MARTINI force field. As representatives of both classes of solvents we have chosen liquid water and butane, respectively, at ambient temperature. The solvent molecules change their resolution back and forth between the atomistic and coarse-grained representations according to their positions in the system. The difficulties that arise from coupling to a coarse-grained model with a multimolecule mapping, for example, 4-to-1 mapping in the case of the Simple Point Charge (SPC) and MARTINI water models, could be successfully circumvented by using bundled water models. We demonstrate that the presented multiscale approach faithfully reproduces the structural and dynamical properties computed by reference fully atomistic molecular dynamics simulations. Our approach is general and can be used with any atomistic force field to be linked with the MARTINI force field.

Original languageEnglish
Pages (from-to)2591-2598
Number of pages8
JournalJournal of Chemical Theory and Computation
Volume10
Issue number6
DOIs
StatePublished - 10 Jun 2014
Externally publishedYes

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