TY - GEN
T1 - Achieving the Capacity of a DNA Storage Channel with Linear Coding Schemes
AU - Levick, Kel
AU - Heckel, Reinhard
AU - Shomorony, Ilan
N1 - Publisher Copyright:
© 2022 IEEE.
PY - 2022
Y1 - 2022
N2 - Due to the redundant nature of DNA synthesis and sequencing technologies, a basic model for a DNA storage system is a multi-draw 'shuffling-sampling' channel. In this model, a random number of noisy copies of each sequence is observed at the channel output. Recent works have characterized the capacity of such a DNA storage channel under different noise and sequencing models, relying on sophisticated typicality-based approaches for the achievability. Here, we consider a multi-draw DNA storage channel in the setting of noise corruption by a binary erasure channel. We show that, in this setting, the capacity is achieved by linear coding schemes. This leads to a considerably simpler derivation of the capacity expression of a multi-draw DNA storage channel than existing results in the literature.
AB - Due to the redundant nature of DNA synthesis and sequencing technologies, a basic model for a DNA storage system is a multi-draw 'shuffling-sampling' channel. In this model, a random number of noisy copies of each sequence is observed at the channel output. Recent works have characterized the capacity of such a DNA storage channel under different noise and sequencing models, relying on sophisticated typicality-based approaches for the achievability. Here, we consider a multi-draw DNA storage channel in the setting of noise corruption by a binary erasure channel. We show that, in this setting, the capacity is achieved by linear coding schemes. This leads to a considerably simpler derivation of the capacity expression of a multi-draw DNA storage channel than existing results in the literature.
KW - DNA storage
KW - channel capacity
KW - linear codes
UR - http://www.scopus.com/inward/record.url?scp=85125950381&partnerID=8YFLogxK
U2 - 10.1109/CISS53076.2022.9751151
DO - 10.1109/CISS53076.2022.9751151
M3 - Conference contribution
AN - SCOPUS:85125950381
T3 - 2022 56th Annual Conference on Information Sciences and Systems, CISS 2022
SP - 218
EP - 223
BT - 2022 56th Annual Conference on Information Sciences and Systems, CISS 2022
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 56th Annual Conference on Information Sciences and Systems, CISS 2022
Y2 - 9 March 2022 through 11 March 2022
ER -