Projects per year
Personal profile
Scientific Career
Mathias Wilhelm studied bioinformatics (B.Sc.) and informatics in the natural sciences (M.Sc.) at the University Bielefeld. After an employment at the Harvard Medical School in the Children’s Hospital Boston in the group of Dr. Hanno Steen, he started his PhD in computational proteomics at the TUM. His dissertation was on "An in-memory platform for the exploration and analysis of big data in biology" - now known as ProteomicsDB. In 2017, he became the bioinformatics group leader at the Chair of Proteomics and Bioanalytics. In 2021, Mathias Wilhelm was appointed to the professorship for Computational Mass Spectrometry at TUM. He is a co-founder of the biotech companies OmicScouts GmbH and MSAID GmbH, both opperating in the field of proteomics.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Group leader bioinformatics, Chair of Bioanalytics
Jun 2017 → Feb 2021
PhD, An in-memory platform for the exploration and analysis of big data in biology, Chair of Bioanalytics
Aug 2012 → May 2017
Research assistant, Boston Children's Hospital
Feb 2012 → Jul 2012
Master, Informatics in the Natural Sciences, Universität Bielefeld
Oct 2009 → Oct 2011
Bachelor, Bioinformatics and Genome Research, Universität Bielefeld
Oct 2006 → Oct 2009
External positions
Core member, Munich Data Science Institute (MDSI)
2024 → …
Co-founder and Sharehold, MSAID GmbH
1 Aug 2019 → …
Co-founder and Sharehold, OmicScouts GmbH
1 Jun 2014 → …
Keywords
- QA75 Electronic computers. Computer science
- Bioinformatics
- Proteomics
- Machine Learning
- Database
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Collaborations and top research areas from the last five years
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Projects
- 1 Active
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DROP2AI: Drug Response Prediction using Proteomics and AI
Wilhelm, M. (PI), Rad, R. (PI), List, M. (PI), Küster, B. (PI) & Saur, D. (PI)
1/03/23 → 28/02/26
Project: Research
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AI-Assisted Processing Pipeline to Boost Protein Isoform Detection
The, M., Picciani, M., Jensen, C., Gabriel, W., Kuster, B. & Wilhelm, M., 2024, In: Methods in molecular biology (Clifton, N.J.). 2836, p. 157-181 25 p.Research output: Contribution to journal › Article › peer-review
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Chemical proteomics reveals the target landscape of 1,000 kinase inhibitors
Reinecke, M., Brear, P., Vornholz, L., Berger, B. T., Seefried, F., Wilhelm, S., Samaras, P., Gyenis, L., Litchfield, D. W., Médard, G., Müller, S., Ruland, J., Hyvönen, M., Wilhelm, M. & Kuster, B., May 2024, In: Nature Chemical Biology. 20, 5, p. 577-585 9 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
Correction to: Exploring crop genomes: assembly features, gene prediction accuracy, and implications for proteomics studies (BMC Genomics, (2024), 25, 1, (619), 10.1186/s12864-024-10521-w)
Abbas, Q., Wilhelm, M., Kuster, B., Poppenberger, B. & Frishman, D., Dec 2024, In: BMC Genomics. 25, 1, 881.Research output: Contribution to journal › Comment/debate
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Correction to: Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification (Nature Communications, (2023), 14, 1, (4632), 10.1038/s41467-023-39570-7)
Tretter, C., de Andrade Krätzig, N., Pecoraro, M., Lange, S., Seifert, P., von Frankenberg, C., Untch, J., Zuleger, G., Wilhelm, M., Zolg, D. P., Dreyer, F. S., Bräunlein, E., Engleitner, T., Uhrig, S., Boxberg, M., Steiger, K., Slotta-Huspenina, J., Ochsenreither, S., von Bubnoff, N. & Bauer, S. & 19 others, , Dec 2024, In: Nature Communications. 15, 1, 2364.Research output: Contribution to journal › Comment/debate
Open Access -
Deep Learning-Assisted Analysis of Immunopeptidomics Data
Gabriel, W., Picciani, M., The, M. & Wilhelm, M., 2024, Methods in Molecular Biology. Humana Press Inc., p. 457-483 27 p. (Methods in Molecular Biology; vol. 2758).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review