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Klaus Mayer

Prof. Dr. rer. nat.

 https://orcid.org/0000-0001-6484-1077
1996 …2025

Research activity per year

Search results

  • 2015

    Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

    De Vega, J. J., Ayling, S., Hegarty, M., Kudrna, D., Goicoechea, J. L., Ergon, Å., Rognli, O. A., Jones, C., Swain, M., Geurts, R., Lang, C., Mayer, K. F. X., Rössner, S., Yates, S., Webb, K. J., Donnison, I. S., Oldroyd, G. E. D., Wing, R. A., Caccamo, M. & Powell, W. & 2 others, Abberton, M. T. & Skøt, L., 30 Nov 2015, In: Scientific Reports. 5, 17394.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    118 Scopus citations
  • 2014

    A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

    Lukaszewski, A. J., Alberti, A., Sharpe, A., Kilian, A., Stanca, A. M., Keller, B., Clavijo, B. J., Friebe, B., Gill, B., Wulff, B., Chapman, B., Steuernagel, B., Feuillet, C., Viseux, C., Pozniak, C., Rokhsar, D. S., Klassen, D., Edwards, D., Akhunov, E. & Paux, E. & 76 others, Alfama, F., Choulet, F., Kobayashi, F., Muehlbauer, G. J., Quesneville, H., Šimková, H., Rimbert, H., Gundlach, H., Budak, H., Sakai, H., Handa, H., Kanamori, H., Batley, J., Vrána, J., Rogers, J., Číhalíková, J., Doležel, J., Chapman, J., Poland, J. A., Wu, J., Khurana, J., Wright, J., Bader, K. C., Eversole, K., Barry, K., McLay, K., Mayer, K. F. X., Singh, K., Clissold, L., Pingault, L., Couderc, L., Cattivelli, L., Spannagl, M., Kubaláková, M., Caccamo, M., Mascher, M., Bellgard, M., Pfeifer, M., Zytnicki, M., Febrer, M., Alaux, M., Martis, M. M., Loaec, M., Colaiacovo, M., Singh, N. K., Glover, N., Guilhot, N., Stein, N., Olsen, O. A., Maclachlan, P. R., Chhuneja, P., Wincker, P., Sourdille, P., Faccioli, P., Ramirez-Gonzalez, R. H., Waugh, R., Šperková, R., Knox, R., Appels, R., Sharma, S., Ayling, S., Praud, S., Wang, S., Lien, S., Sandve, S. R., Matsumoto, T., Endo, T. R., Itoh, T., Nussbaumer, T., Wicker, T., Tanaka, T., Scholz, U., Barbe, V., Jamilloux, V., Ogihara, Y. & Dubská, Z., 2014, In: Science. 345, 6194, 1251788.

    Research output: Contribution to journal › Article › peer-review

    1354 Scopus citations

  • A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms

    Mathew, L. S., Spannagl, M., Al-Malki, A., George, B., Torres, M. F., Al-Dous, E. K., Al-Azwani, E. K., Hussein, E., Mathew, S., Mayer, K. F. X., Mohamoud, Y. A., Suhre, K. & Malek, J. A., 15 Apr 2014, In: BMC Genomics. 15, 1, 285.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    79 Scopus citations

  • An improved genome release (version Mt4.0) for the model legume Medicago truncatula

    Tang, H., Krishnakumar, V., Bidwell, S., Rosen, B., Chan, A., Zhou, S., Gentzbittel, L., Childs, K. L., Yandell, M., Gundlach, H., Mayer, K. F. X., Schwartz, D. C. & Town, C. D., 27 Apr 2014, In: BMC Genomics. 15, 1, 312.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    347 Scopus citations

  • A powerful tool for genome analysis in maize: Development and evaluation of the high density 600 k SNP genotyping array

    Unterseer, S., Bauer, E., Haberer, G., Seidel, M., Knaak, C., Ouzunova, M., Meitinger, T., Strom, T. M., Fries, R., Pausch, H., Bertani, C., Davassi, A., Mayer, K. F. X. & Schön, C. C., 29 Sep 2014, In: BMC Genomics. 15, 1, 823.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    219 Scopus citations

  • A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms

    Ariyadasa, R., Mascher, M., Nussbaumer, T., Schulte, D., Frenkel, Z., Poursarebani, N., Zhou, R., Steuernagel, B., Gundlach, H., Taudien, S., Felder, M., Platzer, M., Himmelbach, A., Schmutzer, T., Hedley, P. E., Muehlbauer, G. J., Scholz, U., Korol, A., Mayer, K. F. X. & Waugh, R. & 3 others, Langridge, P., Graner, A. & Stein, N., Jan 2014, In: Plant Physiology. 164, 1, p. 412-423 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    73 Scopus citations

  • Bacteria-triggered systemic immunity in barley is associated with WRKY and ETHYLENE RESPONSIVE FACTORs but not with salicylic acid

    Dey, S., Wenig, M., Langen, G., Sharma, S., Kugler, K. G., Knappe, C., Hause, B., Bichlmeier, M., Babaeizad, V., Imani, J., Janzik, I., Stempfl, T., Hückelhoven, R., Kogel, K. H., Mayer, K. F. X. & Corina Vlot, A., 1 Dec 2014, In: Plant Physiology. 166, 4, p. 2133-2151 19 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    71 Scopus citations

  • chromoWIZ: A web tool to query and visualize chromosome-anchored genes from cereal and model genomes

    Nussbaumer, T., Kugler, K. G., Schweiger, W., Bader, K. C., Gundlach, H., Spannagl, M., Poursarebani, N., Pfeifer, M. & Mayer, K. F. X., 2014, In: BMC Plant Biology. 14, 1, 348.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    7 Scopus citations

  • Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life

    Weßling, R., Epple, P., Altmann, S., He, Y., Yang, L., Henz, S. R., McDonald, N., Wiley, K., Bader, K. C., Gläßer, C., Mukhtar, M. S., Haigis, S., Ghamsari, L., Stephens, A. E., Ecker, J. R., Vidal, M., Jones, J. D. G., Mayer, K. F. X., Ver Loren Van Themaat, E. & Weigel, D. & 4 others, Schulze-Lefert, P., Dangl, J. L., Panstruga, R. & Braun, P., 10 Sep 2014, In: Cell Host and Microbe. 16, 3, p. 364-375 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    301 Scopus citations

  • Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (Cotton)

    Guo, H., Wang, X., Gundlach, H., Mayer, K. F. X., Peterson, D. G., Scheffler, B. E., Chee, P. W. & Paterson, A. H., 2014, In: Genetics. 197, 4, p. 1153-1163 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    49 Scopus citations

  • Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion

    Jacquemin, J., Ammiraju, J. S. S., Haberer, G., Billheimer, D. D., Yu, Y., Liu, L. C., Rivera, L. F., Mayer, K., Chen, M. & Wing, R. A., Apr 2014, In: Molecular Plant. 7, 4, p. 642-656 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    44 Scopus citations

  • Functional diversification within the family of B-GATA transcription factors through the Leucine-Leucine-Methionine Domain

    Behringer, C., Bastakis, E., Ranftl, Q. L., Mayer, K. F. X. & Schwechheimer, C., 1 Sep 2014, In: Plant Physiology. 166, 1, p. 293-305 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    45 Scopus citations

  • Genetic analysis of DEFECTIVE KERNEL1 loop function in three-dimensional body patterning in Physcomitrella patens

    Demko, V., Perroud, P. F., Johansen, W., Delwiche, C. F., Cooper, E. D., Remme, P., Ako, A. E., Kugler, K. G., Mayer, K. F. X., Quatrano, R. & Olsen, O. A., 1 Oct 2014, In: Plant Physiology. 166, 2, p. 903-919 17 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations

  • Genome interplay in the grain transcriptome of hexaploid bread wheat

    The International Wheat Genome Sequencing Consortium, 2014, In: Science. 345, 6194

    Research output: Contribution to journal › Article › peer-review

    Open Access
    276 Scopus citations

  • High-resolution mapping of the barley Ryd3 locus controlling tolerance to BYDV

    Lüpken, T., Stein, N., Perovic, D., Habekuß, A., Serfling, A., Krämer, I., Hähnel, U., Steuernagel, B., Scholz, U., Ariyadasa, R., Martis, M., Mayer, K., Niks, R. E., Collins, N. C., Friedt, W. & Ordon, F., Feb 2014, In: Molecular Breeding. 33, 2, p. 477-488 12 p.

    Research output: Contribution to journal › Article › peer-review

    8 Scopus citations

  • Meta-analysis of retrograde signaling in Arabidopsis thaliana reveals a core module of genes embedded in complex cellular signaling networks

    Gläßer, C., Haberer, G., Finkemeier, I., Pfannschmidt, T., Kleine, T., Leister, D., Dietz, K. J., Häusler, R. E., Grimm, B. & Mayer, K. F. X., Jul 2014, In: Molecular Plant. 7, 7, p. 1167-1190 24 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    65 Scopus citations

  • Plant genome sequencing - applications for crop improvement

    Bolger, M. E., Weisshaar, B., Scholz, U., Stein, N., Usadel, B. & Mayer, K. F. X., Apr 2014, In: Current Opinion in Biotechnology. 26, p. 31-37 7 p.

    Research output: Contribution to journal › Review article › peer-review

    155 Scopus citations

  • RNASeqExpressionBrowser-a web interface to browse and visualize high-throughput expression data

    Nussbaumer, T., Kugler, K. G., Bader, K. C., Sharma, S., Seidel, M. & Mayer, K. F. X., 1 Sep 2014, In: Bioinformatics. 30, 17, p. 2519-2520 2 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    23 Scopus citations

  • Separating the wheat from the chaff - A strategy to utilize plant genetic resources from ex situ genebanks

    Keilwagen, J., Kilian, B., Özkan, H., Babben, S., Perovic, D., Mayer, K. F. X., Walther, A., Poskar, C. H., Ordon, F., Eversole, K., Börner, A., Ganal, M., Knüpffer, H., Graner, A. & Friedel, S., 10 Jun 2014, In: Scientific Reports. 4, 5231.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations

  • Slicing the wheat genome

    Eversole, K., Feuillet, C., Mayer, K. F. X. & Rogers, J., 2014, In: Science. 345, 6194, p. 285 1 p.

    Research output: Contribution to journal › Editorial

    51 Scopus citations

  • Structural and functional partitioning of bread wheat chromosome 3B

    Choulet, F., Alberti, A., Theil, S., Glover, N., Barbe, V., Daron, J., Pingault, L., Sourdille, P., Couloux, A., Paux, E., Leroy, P., Mangenot, S., Guilhot, N., Le Gouis, J., Balfourier, F., Alaux, M., Jamilloux, V., Poulain, J., Durand, C. & Bellec, A. & 11 others, Gaspin, C., Safar, J., Dolezel, J., Rogers, J., Vandepoele, K., Aury, J. M., Mayer, K., Berges, H., Quesneville, H., Wincker, P. & Feuillet, C., 2014, In: Science. 345, 6194, 1249721.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    464 Scopus citations

  • The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

    Wang, M., Yu, Y., Haberer, G., Marri, P. R., Fan, C., Goicoechea, J. L., Zuccolo, A., Song, X., Kudrna, D., Ammiraju, J. S. S., Cossu, R. M., Maldonado, C., Chen, J., Lee, S., Sisneros, N., De Baynast, K., Golser, W., Wissotski, M., Kim, W. & Sanchez, P. & 11 others, Ndjiondjop, M. N., Sanni, K., Long, M., Carney, J., Panaud, O., Wicker, T., MacHado, C. A., Chen, M., Mayer, K. F. X., Rounsley, S. & Wing, R. A., 2014, In: Nature Genetics. 46, 9, p. 982-988 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    309 Scopus citations

  • The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle

    Wang, W., Haberer, G., Gundlach, H., Gläßer, C., Nussbaumer, T., Luo, M. C., Lomsadze, A., Borodovsky, M., Kerstetter, R. A., Shanklin, J., Byrant, D. W., Mockler, T. C., Appenroth, K. J., Grimwood, J., Jenkins, J., Chow, J., Choi, C., Adam, C., Cao, X. H. & Fuchs, J. & 6 others, Schubert, I., Rokhsar, D., Schmutz, J., Michael, T. P., Mayer, K. F. X. & Messing, J., 19 Feb 2014, In: Nature Communications. 5, 3311.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    241 Scopus citations

  • Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A

    Poursarebani, N., Nussbaumer, T., Šimková, H., Šafář, J., Witsenboer, H., Van Oeveren, J., Doležel, J., Mayer, K. F. X., Stein, N. & Schnurbusch, T., Jul 2014, In: Plant Journal. 79, 2, p. 334-347 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    41 Scopus citations
  • 2013

    A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

    Luo, M. C., Gu, Y. Q., You, F. M., Deal, K. R., Ma, Y., Hu, Y., Huo, N., Wang, Y., Wang, J., Chen, S., Jorgensen, C. M., Zhang, Y., McGuire, P. E., Pasternak, S., Stein, J. C., Ware, D., Kramer, M., McCombie, W. R., Kianian, S. F. & Martis, M. M. & 11 others, Mayer, K. F. X., Sehgal, S. K., Li, W., Gill, B. S., Bevan, M. W., Šimková, H., Doležel, J., Weining, S., Lazo, G. R., Anderson, O. D. & Dvorak, J., 7 May 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 19, p. 7940-7945 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    180 Scopus citations

  • Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

    Jia, J., Zhao, S., Kong, X., Li, Y., Zhao, G., He, W., Appels, R., Pfeifer, M., Tao, Y., Zhang, X., Jing, R., Zhang, C., Ma, Y., Gao, L., Gao, C., Spannagl, M., Mayer, K. F. X., Li, D., Pan, S. & Zheng, F. & 27 others, Hu, Q., Xia, X., Li, J., Liang, Q., Chen, J., Wicker, T., Gou, C., Kuang, H., Wang, J., He, G., Luo, Y., Keller, B., Xia, Q., Lu, P., Wang, J., Zou, H., Zhang, R., Xu, J., Gao, J., Middleton, C., Quan, Z., Liu, G., Wang, J., Yang, H., Liu, X., He, Z. & Mao, L., 4 Apr 2013, In: Nature. 496, 7443, p. 91-95 5 p.

    Research output: Contribution to journal › Article › peer-review

    655 Scopus citations

  • A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat

    Philippe, R., Paux, E., Bertin, I., Sourdille, P., Choulet, F., Laugier, C., Šimková, H., Šafář, J., Bellec, A., Vautrin, S., Frenkel, Z., Cattonaro, F., Magni, F., Scalabrin, S., Martis, M. M., Mayer, K. F. X., Korol, A., Bergès, H., Doležel, J. & Feuillet, C., 25 Jun 2013, In: Genome Biology. 14, 6, R64.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    44 Scopus citations

  • Analysing complex Triticeae genomes - concepts and strategies

    Spannagl, M., Martis, M. M., Pfeifer, M., Nussbaumer, T. & Mayer, K. F. X., 6 Sep 2013, In: Plant Methods. 9, 1, 35.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    17 Scopus citations

  • Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

    Mascher, M., Muehlbauer, G. J., Rokhsar, D. S., Chapman, J., Schmutz, J., Barry, K., Muñoz-Amatriaín, M., Close, T. J., Wise, R. P., Schulman, A. H., Himmelbach, A., Mayer, K. F. X., Scholz, U., Poland, J. A., Stein, N. & Waugh, R., Nov 2013, In: Plant Journal. 76, 4, p. 718-727 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    223 Scopus citations

  • Barley whole exome capture: A tool for genomic research in the genus Hordeum and beyond

    Mascher, M., Richmond, T. A., Gerhardt, D. J., Himmelbach, A., Clissold, L., Sampath, D., Ayling, S., Steuernagel, B., Pfeifer, M., D'Ascenzo, M., Akhunov, E. D., Hedley, P. E., Gonzales, A. M., Morrell, P. L., Kilian, B., Blattner, F. R., Scholz, U., Mayer, K. F. X., Flavell, A. J. & Muehlbauer, G. J. & 3 others, Waugh, R., Jeddeloh, J. A. & Stein, N., Nov 2013, In: Plant Journal. 76, 3, p. 494-505 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    208 Scopus citations

  • Conserved synteny-based anchoring of the barley genome physical map

    Poursarebani, N., Ariyadasa, R., Zhou, R., Schulte, D., Steuernagel, B., Martis, M. M., Graner, A., Schweizer, P., Scholz, U., Mayer, K. & Stein, N., Aug 2013, In: Functional and Integrative Genomics. 13, 3, p. 339-350 12 p.

    Research output: Contribution to journal › Article › peer-review

    10 Scopus citations

  • Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

    Muñoz-Amatriaín, M., Eichten, S. R., Wicker, T., Richmond, T. A., Mascher, M., Steuernagel, B., Scholz, U., Ariyadasa, R., Spannagl, M., Nussbaumer, T., Mayer, K. F. X., Taudien, S., Platzer, M., Jeddeloh, J. A., Springer, N. M., Muehlbauer, G. J. & Stein, N., 12 Jun 2013, In: Genome Biology. 14, 6, R58.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    92 Scopus citations

  • Flow sorting and sequencing meadow fescue chromosome 4F

    Kopecký, D., Martis, M., Číhalíková, J., Hřibová, E., Vrána, J., Bartoš, J., Kopecká, J., Cattonaro, F., Stočes, Š., Novák, P., Neumann, P., Macas, J., Šimková, H., Studer, B., Asp, T., Baird, J. H., Navrátil, P., Karafiátová, M., Kubaláková, M. & Šafář, J. & 2 others, Mayer, K. & Doležel, J., Nov 2013, In: Plant Physiology. 163, 3, p. 1323-1337 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Functional characterization of two clusters of Brachypodium distachyon UDP-glycosyltransferases encoding putative deoxynivalenol detoxification genes

    Schweiger, W., Pasquet, J. C., Nussbaumer, T., Kovalsky Paris, M. P., Wiesenberger, G., Macadré, C., Ametz, C., Berthiller, F., Lemmens, M., Saindrenan, P., Mewes, H. W., Mayer, K. F. X., Dufresne, M. & Adam, G., Jul 2013, In: Molecular Plant-Microbe Interactions. 26, 7, p. 781-792 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    69 Scopus citations

  • GABI-DUPLO: A collection of double mutants to overcome genetic redundancy in Arabidopsis thaliana

    Bolle, C., Huep, G., Kleinbölting, N., Haberer, G., Mayer, K., Leister, D. & Weisshaar, B., Jul 2013, In: Plant Journal. 75, 1, p. 157-171 15 p.

    Research output: Contribution to journal › Article › peer-review

    41 Scopus citations

  • Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.)

    Lüpken, T., Stein, N., Perovic, D., Habekuß, A., Krämer, I., Hähnel, U., Steuernagel, B., Scholz, U., Zhou, R., Ariyadasa, R., Taudien, S., Platzer, M., Martis, M., Mayer, K., Friedt, W. & Ordon, F., May 2013, In: Theoretical and Applied Genetics. 126, 5, p. 1201-1212 12 p.

    Research output: Contribution to journal › Article › peer-review

    22 Scopus citations

  • Molecular and Immunological Characterization of Ragweed (Ambrosia artemisiifolia L.) Pollen after Exposure of the Plants to Elevated Ozone over a Whole Growing Season

    Kanter, U., Heller, W., Durner, J., Winkler, J. B., Engel, M., Behrendt, H., Holzinger, A., Braun, P., Hauser, M., Ferreira, F., Mayer, K., Pfeifer, M. & Ernst, D., 18 Apr 2013, In: PLoS ONE. 8, 4, e61518.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    60 Scopus citations

  • Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.)

    Kugler, K. G., Siegwart, G., Nussbaumer, T., Ametz, C., Spannagl, M., Steiner, B., Lemmens, M., Mayer, K. F. X., Buerstmayr, H. & Schweiger, W., 24 Oct 2013, In: BMC Genomics. 14, 1, 728.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    86 Scopus citations

  • Reticulate evolution of the rye genome

    Martis, M. M., Zhou, R., Haseneyer, G., Schmutzer, T., Vrána, J., Kubaláková, M., König, S., Kugler, K. G., Scholz, U., Hackauf, B., Korzun, V., Schön, C. C., Doležel, J., Bauer, E., Mayer, K. F. X. & Stein, N., Oct 2013, In: Plant Cell. 25, 10, p. 3685-3698 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    174 Scopus citations

  • Sequence-based analysis of translocations and inversions in bread wheat (Triticum aestivum L.)

    Ma, J., Stiller, J., Berkman, P. J., Wei, Y., Rogers, J., Feuillet, C., Dolezel, J., Mayer, K. F., Eversole, K., Zheng, Y. L. & Liu, C., 15 Nov 2013, In: PLoS ONE. 8, 11, e79329.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    50 Scopus citations

  • The perennial ryegrass genomezipper: Targeted use of genome resources for comparative grass genomics

    Pfeifer, M., Martis, M., Asp, T., Mayer, K. F. X., Lübberstedt, T., Byrne, S., Frei, U. & Studer, B., Feb 2013, In: Plant Physiology. 161, 2, p. 571-582 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    76 Scopus citations
  • 2012

    Analysis of the bread wheat genome using whole-genome shotgun sequencing

    Brenchley, R., Spannagl, M., Pfeifer, M., Barker, G. L. A., D'Amore, R., Allen, A. M., McKenzie, N., Kramer, M., Kerhornou, A., Bolser, D., Kay, S., Waite, D., Trick, M., Bancroft, I., Gu, Y., Huo, N., Luo, M. C., Sehgal, S., Gill, B. & Kianian, S. & 9 others, Anderson, O., Kersey, P., Dvorak, J., McCombie, W. R., Hall, A., Mayer, K. F. X., Edwards, K. J., Bevan, M. W. & Hall, N., 29 Nov 2012, In: Nature. 491, 7426, p. 705-710 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    934 Scopus citations

  • A physical, genetic and functional sequence assembly of the barley genome

    Mayer, K. F. X., Waugh, R., Langridge, P., Close, T. J., Wise, R. P., Graner, A., Matsumoto, T., Sato, K., Schulman, A., Ariyadasa, R., Schulte, D., Poursarebani, N., Zhou, R., Steuernagel, B., Mascher, M., Scholz, U., Shi, B., Madishetty, K., Svensson, J. T. & Bhat, P. & 52 others, Moscou, M., Resnik, J., Muehlbauer, G. J., Hedley, P., Liu, H., Morris, J., Frenkel, Z., Korol, A., Bergès, H., Taudien, S., Felder, M., Groth, M., Platzer, M., Himmelbach, A., Lonardi, S., Duma, D., Alpert, M., Cordero, F., Beccuti, M., Ciardo, G., Ma, Y., Wanamaker, S., Cattonaro, F., Vendramin, V., Scalabrin, S., Radovic, S., Wing, R., Morgante, M., Nussbaumer, T., Gundlach, H., Martis, M., Poland, J., Pfeifer, M., Moisy, C., Tanskanen, J., Zuccolo, A., Spannagl, M., Russell, J., Druka, A., Marshall, D., Bayer, M., Swarbreck, D., Sampath, D., Ayling, S., Febrer, M., Caccamo, M., Tanaka, T., Wannamaker, S., Schmutzer, T., Brown, J. W. S., Fincher, G. B. & Stein, N., 29 Nov 2012, In: Nature. 491, 7426, p. 711-716 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1228 Scopus citations

  • Evidence for acontribution of ALA synthesis to plastid-to-nucleus signaling

    Czarnecki, O., Gläßer, C., Chen, J. G., Mayer, K. F. X. & Grimm, B., 29 Oct 2012, In: Frontiers in Plant Science. 3, OCT, 236.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    37 Scopus citations

  • Integrating cereal genomics to support innovation in the Triticeae

    Feuillet, C., Stein, N., Rossini, L., Praud, S., Mayer, K., Schulman, A., Eversole, K. & Appels, R., Nov 2012, In: Functional and Integrative Genomics. 12, 4, p. 573-583 11 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    40 Scopus citations

  • Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

    Hernandez, P., Martis, M., Dorado, G., Pfeifer, M., Gálvez, S., Schaaf, S., Jouve, N., Šimková, H., Valárik, M., Doležel, J. & Mayer, K. F. X., Feb 2012, In: Plant Journal. 69, 3, p. 377-386 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    133 Scopus citations

  • Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

    Paterson, A. H., Wendel, J. F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K. C., Shu, S., Udall, J., Yoo, M. J., Byers, R., Chen, W., Doron-Faigenboim, A., Duke, M. V., Gong, L., Grimwood, J., Grover, C., Grupp, K. & Hu, G. & 54 others, Lee, T. H., Li, J., Lin, L., Liu, T., Marler, B. S., Page, J. T., Roberts, A. W., Romanel, E., Sanders, W. S., Szadkowski, E., Tan, X., Tang, H., Xu, C., Wang, J., Wang, Z., Zhang, D., Zhang, L., Ashrafi, H., Bedon, F., Bowers, J. E., Brubaker, C. L., Chee, P. W., Das, S., Gingle, A. R., Haigler, C. H., Harker, D., Hoffmann, L. V., Hovav, R., Jones, D. C., Lemke, C., Mansoor, S., Rahman, M. U., Rainville, L. N., Rambani, A., Reddy, U. K., Rong, J. K., Saranga, Y., Scheffler, B. E., Scheffler, J. A., Stelly, D. M., Triplett, B. A., Van Deynze, A., Vaslin, M. F. S., Waghmare, V. N., Walford, S. A., Wright, R. J., Zaki, E. A., Zhang, T., Dennis, E. S., Mayer, K. F. X., Peterson, D. G., Rokhsar, D. S., Wang, X. & Schmutz, J., 20 Dec 2012, In: Nature. 492, 7429, p. 423-427 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1036 Scopus citations

  • Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences

    Martis, M. M., Klemme, S., Banaei-Moghaddam, A. M., Blattner, F. R., Macas, J., Schmutzer, T., Scholz, U., Gundlach, H., Wicker, T., Sǐmková, H., Novaḱ, P., Neumann, P., Kubalaḱová, M., Bauer, E., Haseneyer, G., Fuchs, J., Dolezěl, J., Stein, N., Mayer, K. F. X. & Houben, A., 14 Aug 2012, In: Proceedings of the National Academy of Sciences of the United States of America. 109, 33, p. 13343-13346 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    171 Scopus citations

  • The tomato genome sequence provides insights into fleshy fruit evolution

    Sato, S., Tabata, S., Hirakawa, H., Asamizu, E., Shirasawa, K., Isobe, S., Kaneko, T., Nakamura, Y., Shibata, D., Aoki, K., Egholm, M., Knight, J., Bogden, R., Li, C., Shuang, Y., Xu, X., Pan, S., Cheng, S., Liu, X. & Ren, Y. & 299 others, Wang, J., Albiero, A., Dal Pero, F., Todesco, S., Van Eck, J., Buels, R. M., Bombarely, A., Gosselin, J. R., Huang, M., Leto, J. A., Menda, N., Strickler, S., Mao, L., Gao, S., Tecle, I. Y., York, T., Zheng, Y., Vrebalov, J. T., Lee, J., Zhong, S., Mueller, L. A., Stiekema, W. J., Ribeca, P., Alioto, T., Yang, W., Huang, S., Du, Y., Zhang, Z., Gao, J., Guo, Y., Wang, X., Li, Y., He, J., Li, C., Cheng, Z., Zuo, J., Ren, J., Zhao, J., Yan, L., Jiang, H., Wang, B., Li, H., Li, Z., Fu, F., Chen, B., Han, B., Feng, Q., Fan, D., Wang, Y., Ling, H., Xue, Y., Ware, D., Richard McCombie, W., Lippman, Z. B., Chia, J. M., Jiang, K., Pasternak, S., Gelley, L., Kramer, M., Anderson, L. K., Chang, S. B., Royer, S. M., Shearer, L. A., Stack, S. M., Rose, J. K. C., Xu, Y., Eannetta, N., Matas, A. J., McQuinn, R., Tanksley, S. D., Camara, F., Guigó, R., Rombauts, S., Fawcett, J., Van De Peer, Y., Zamir, D., Liang, C., Spannagl, M., Gundlach, H., Bruggmann, R., Mayer, K., Jia, Z., Zhang, J., Ye, Z., Bishop, G. J., Butcher, S., Lopez-Cobollo, R., Buchan, D., Filippis, I., Abbott, J., Dixit, I. R., Singh, M., Singh, A., Pal, J. K., Pandit, A., Singh, P. K., Mahato, A. K., Dogra, V., Gaikwad, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Causse, M., Rothan, C., Noirot, C., Bellec, A., Klopp, C., Delalande, C., Berges, H., Mariette, J., Frasse, P., Vautrin, S., Zouine, T. M., Latché, A., Rousseau, C., Regad, F., Pech, J. C., Philippot, M., Bouzayen, M., Pericard, P., Osorio, S., Del Carmen, A. F., Monforte, A., Granell, A., Fernandez-Muñoz, R., Conte, M., Lichtenstein, G., Carrari, F., De Bellis, G., Fuligni, F., Peano, C., Grandillo, S., Termolino, P., Pietrella, M., Fantini, E., Falcone, G., Fiore, A., Giuliano, G., Lopez, L., Facella, P., Perrotta, G., Daddiego, L., Bryan, G., Orozco, B. M., Pastor, X., Torrents, D., Van Schriek, M. G. M., Feron, R. M. C., Van Oeveren, J., De Heer, P., Da Ponte, L., Jacobs-Oomen, S., Cariaso, M., Prins, M., Van Eijk, M. J. T., Janssen, A., Van Haaren, J. J., -HwanJo, S., Kim, J., Kwon, S. Y., Kim, S., Koo, D. H., Lee, S., Clouser, C., Rico, A., Hallab, A., Gebhardt, C., Klee, K., Jöcker, A., Warfsmann, J., Göbel, U., Kawamura, S., Yano, K., Sherman, J. D., Fukuoka, H., Negoro, S., Bhutty, S., Chowdhury, P., Chattopadhyay, D., Datema, E., Smit, S., Schijlen, E. G. W. M., Van De Belt, J., Van Haarst, J. C., Peters, S. A., Van Staveren, M. J., Henkens, M. H. C., Mooyman, P. J. W., Hesselink, T., Van Ham, R. C. H. J., Jiang, G., Droege, M., Choi, D., Kang, B. C., Kim, B. D., Park, M., Kim, S., Yeom, S. I., Lee, Y. H., Choi, Y. D., Li, G., Gao, J., Liu, Y., Huang, S., Fernandez-Pedrosa, V., Collado, C., Zuñ Iga, S., Wang, G., Cade, R., Dietrich, R. A., Rogers, J., Knapp, S., Fei, Z., White, R. A., Thannhauser, T. W., Giovannoni, J. J., Botella, M. A., Gilbert, L., Gonzalez, F. R., Goicoechea, J. L., Yu, Y., Kudrna, D., Collura, K., Wissotski, M., Wing, R., Meyers, B. C., Gurazada, A. B., Green, P. J., Mathur, S., Vyas, S., Solanke, A. U., Kumar, R., Gupta, V., Sharma, A. K., Khurana, P., Khurana, J. P., Tyagi, A. K., Dalmay, T., Mohorianu, I., Walts, B., Chamala, S., Barbazuk, W. B., Li, J., Guo, H., Lee, T. H., Wang, Y., Zhang, D., Paterson, A. H., Wang, X., Tang, H., Barone, A., Chiusano, M. L., Ercolano, M. R., D'Agostino, N., Di Filippo, M., Traini, A., Sanseverino, W., Frusciante, L., Seymour, G. B., Elharam, M., Fu, Y., Hua, A., Kenton, S., Lewis, J., Lin, S., Najar, F., Lai, H., Qin, B., Shi, R., Qu, C., White, D., White, J., Xing, Y., Yang, K., Yi, J., Yao, Z., Zhou, L., Roe, B. A., Vezzi, A., D'Angelo, M., Zimbello, R., Schiavon, R., Caniato, E., Rigobello, C., Campagna, D., Vitulo, N., Valle, G., Nelson, D. R., De Paoli, E., Szinay, D., De Jong, H. H., Bai, Y., Visser, R. G. F., Lankhorst, R. K., Beasley, H., McLaren, K., Nicholson, C., Riddle, C. & Gianese, G., 2012, In: Nature. 485, 7400, p. 635-641 7 p.

    Research output: Contribution to journal › Article › peer-review

    2598 Scopus citations

  • TriAnnot: A versatile and high performance pipeline for the automated annotation of plant genomes

    Leroy, P., Guilhot, N., Sakai, H., Bernard, A., Choulet, F., Theil, S., Reboux, S., Amano, N., Flutre, T., Pelegrin, C., Ohyanagi, H., Seidel, M., Giacomoni, F., Reichstadt, M., Alaux, M., Gicquello, E., Legeai, F., Cerutti, L., Numa, H. & Tanaka, T. & 4 others, Mayer, K., Itoh, T., Quesneville, H. & Feuillet, C., 31 Jan 2012, In: Frontiers in Plant Science. 3, JAN, 5.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    62 Scopus citations