Julia Schnabel

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Julia Schnabel

Prof. Dr.

 https://orcid.org/0000-0001-6107-3009
1994 …2025

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  • 2020

    Syn-Net for Synergistic Deep-Learned PET-MR Reconstruction

    Corda-D'Incan, G., Schnabel, J. A. & Reader, A. J., 2020, 2020 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2020. Institute of Electrical and Electronics Engineers Inc., (2020 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2020).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2019

    Complete Fetal Head Compounding from Multi-view 3D Ultrasound

    Wright, R., Toussaint, N., Gomez, A., Zimmer, V., Khanal, B., Matthew, J., Skelton, E., Kainz, B., Rueckert, D., Hajnal, J. V. & Schnabel, J. A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 384-392 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11766 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Deep Learning Based Approach to Quantification of PET Tracer Uptake in Small Tumors

    Dal Toso, L., Pfaehler, E., Boellaard, R., Schnabel, J. A. & Marsden, P. K., 2019, Machine Learning for Medical Image Reconstruction - 2nd International Workshop, MLMIR 2019, held in Conjunction with MICCAI 2019, Proceedings. Knoll, F., Maier, A., Rueckert, D. & Ye, J. C. (eds.). Springer, p. 181-192 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11905 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Detection and correction of cardiac MRI motion artefacts during reconstruction from k-space

    Oksuz, I., Clough, J., Ruijsink, B., Puyol-Antón, E., Bustin, A., Cruz, G., Prieto, C., Rueckert, D., King, A. P. & Schnabel, J. A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 695-703 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations

  • Explicit Topological Priors for Deep-Learning Based Image Segmentation Using Persistent Homology

    Clough, J. R., Oksuz, I., Byrne, N., Schnabel, J. A. & King, A. P., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Bao, S., Chung, A. C. S., Gee, J. C. & Yushkevich, P. A. (eds.). Springer Verlag, p. 16-28 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    42 Scopus citations

  • Global and local interpretability for cardiac MRI classification

    Clough, J. R., Oksuz, I., Puyol-Antón, E., Ruijsink, B., King, A. P. & Schnabel, J. A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 656-664 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    47 Scopus citations

  • Image Reconstruction in a Manifold of Image Patches: Application to Whole-Fetus Ultrasound Imaging

    Gomez, A., Zimmer, V., Toussaint, N., Wright, R., Clough, J. R., Khanal, B., van Poppel, M. P. M., Skelton, E., Matthews, J. & Schnabel, J. A., 2019, Machine Learning for Medical Image Reconstruction - 2nd International Workshop, MLMIR 2019, held in Conjunction with MICCAI 2019, Proceedings. Knoll, F., Maier, A., Rueckert, D. & Ye, J. C. (eds.). Springer, p. 226-235 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11905 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    8 Scopus citations

  • Learning Associations Between Clinical Information and Motion-Based Descriptors Using a Large Scale MR-derived Cardiac Motion Atlas

    Puyol-Antón, E., Ruijsink, B., Langet, H., De Craene, M., Piro, P., Schnabel, J. A. & King, A. P., 2019, Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges - 9th International Workshop, STACOM 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Sermesant, M., Zhao, J., Young, A., Rhode, K., Pop, M., McLeod, K., Mansi, T. & Li, S. (eds.). Springer Verlag, p. 94-102 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11395 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Left-Ventricle Quantification Using Residual U-Net

    Kerfoot, E., Clough, J., Oksuz, I., Lee, J., King, A. P. & Schnabel, J. A., 2019, Statistical Atlases and Computational Models of the Heart. Atrial Segmentation and LV Quantification Challenges - 9th International Workshop, STACOM 2018, Held in Conjunction with MICCAI 2018, Revised Selected Papers. Young, A., Rhode, K., Pop, M., Zhao, J., McLeod, K., Li, S., Sermesant, M. & Mansi, T. (eds.). Springer Verlag, p. 371-380 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11395 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    126 Scopus citations

  • Magnetic resonance fingerprinting using recurrent neural networks

    Oksuz, I., Cruz, G., Clough, J., Bustin, A., Fuin, N., Botnar, R. M., Prieto, C., King, A. P. & Schnabel, J. A., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 1537-1540 4 p. 8759502. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    34 Scopus citations

  • Mechanically Powered Motion Imaging Phantoms: Proof of Concept

    Gomez, A., Schmitz, C., Henningsson, M., Housden, J., Noh, Y., Zimmer, V. A., Clough, J. R., Oksuz, I., Toussaint, N., King, A. P. & Schnabel, J. A., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 2723-2726 4 p. 8856577. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations

  • Synthesising images and labels between mr sequence types with cycleGAN

    Kerfoot, E., Puyol-Antón, E., Ruijsink, B., Ariga, R., Zacur, E., Lamata, P. & Schnabel, J., 2019, Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. Wang, Q., Milletari, F., Rieke, N., Nguyen, H. V., Roysam, B., Albarqouni, S., Cardoso, M. J., Xu, Z., Kamnitsas, K., Patel, V., Jiang, S., Zhou, K., Luu, K. & Le, N. (eds.). Springer, p. 45-53 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11795 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Towards Whole Placenta Segmentation at Late Gestation Using Multi-view Ultrasound Images

    Zimmer, V. A., Gomez, A., Skelton, E., Toussaint, N., Zhang, T., Khanal, B., Wright, R., Noh, Y., Ho, A., Matthew, J., Hajnal, J. V. & Schnabel, J. A., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 628-636 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11768 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    15 Scopus citations
  • 2018

    Automated CNN-based reconstruction of short-axis cardiac MR sequence from real-time image data

    Kerfoot, E., Puyol Anton, E., Ruijsink, B., Clough, J., King, A. P. & Schnabel, J. A., 2018, Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Snead, D., Trucco, E., Stoyanov, D., Taylor, Z., Maier-Hein, L., Rajpoot, N., Bogunovic, H., Ciompi, F., Veta, M., Garvin, M. K., Chen, X. J., Martel, A., van der Laak, J., Xu, Y. & McKenna, S. (eds.). Springer Verlag, p. 32-41 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11040 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations

  • Automatic left ventricular outflow tract classification for accurate cardiac MR planning

    Oksuz, I., Ruijsink, B., Puyol-Anton, E., Sinclair, M., Rueckert, D., Schnabel, J. A. & King, A. P., 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 462-465 4 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Automatic shadow detection in 2D ultrasound images

    Meng, Q., Baumgartner, C., Sinclair, M., Housden, J., Rajchl, M., Gomez, A., Hou, B., Toussaint, N., Zimmer, V., Tan, J., Matthew, J., Rueckert, D., Schnabel, J. & Kainz, B., 2018, Data Driven Treatment Response Assessment and Preterm, Perinatal, and Paediatric Image Analysis - First International Workshop, DATRA 2018 and Third International Workshop, PIPPI 2018 Held in Conjunction with MICCAI 2018, Proceedings. Melbourne, A., Aughwane, R., Robinson, E., Licandro, R., Gau, M., Kampel, M., DiFranco, M., Rota, P., Licandro, R., Moeskops, P., Schwartz, E. & Makropoulos, A. (eds.). Springer Verlag, p. 66-75 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11076 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    10 Scopus citations

  • BESNet: Boundary-enhanced segmentation of cells in histopathological images

    Oda, H., Roth, H. R., Chiba, K., Sokolić, J., Kitasaka, T., Oda, M., Hinoki, A., Uchida, H., Schnabel, J. A. & Mori, K., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Fichtinger, G., Davatzikos, C., Alberola-López, C., Frangi, A. F. & Schnabel, J. A. (eds.). Springer Verlag, p. 228-236 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11071 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    81 Scopus citations

  • Cardiac mr motion artefact correction from k-space using deep learning-based reconstruction

    Oksuz, I., Clough, J., Bustin, A., Cruz, G., Prieto, C., Botnar, R., Rueckert, D., Schnabel, J. A. & King, A. P., 2018, Machine Learning for Medical Image Reconstruction - First International Workshop, MLMIR 2018, Held in Conjunction with MICCAI 2018, Proceedings. Knoll, F., Maier, A. & Rueckert, D. (eds.). Springer Verlag, p. 21-29 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11074 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    21 Scopus citations

  • Deep learning using K-space based data augmentation for automated cardiac MR motion artefact detection

    Oksuz, I., Ruijsink, B., Puyol-Antón, E., Bustin, A., Cruz, G., Prieto, C., Rueckert, D., Schnabel, J. A. & King, A. P., 2018, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 - 21st International Conference, 2018, Proceedings. Schnabel, J. A., Davatzikos, C., Alberola-López, C., Fichtinger, G. & Frangi, A. F. (eds.). Springer Verlag, p. 250-258 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11070 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    18 Scopus citations

  • Dense volumetric detection and segmentation of mediastinal lymph nodes in chest CT images

    Oda, H., Roth, H. R., Bhatia, K. K., Oda, M., Kitasaka, T., Iwano, S., Homma, H., Takabatake, H., Mori, M., Natori, H., Schnabel, J. A. & Mori, K., 2018, Medical Imaging 2018: Computer-Aided Diagnosis. Mori, K. & Petrick, N. (eds.). SPIE, 1057502. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10575).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    25 Scopus citations

  • EchoFusion: Tracking and reconstruction of objects in 4D freehand ultrasound imaging without external trackers

    Khanal, B., Gomez, A., Toussaint, N., McDonagh, S., Zimmer, V., Skelton, E., Matthew, J., Grzech, D., Wright, R., Gupta, C., Hou, B., Rueckert, D., Schnabel, J. A. & Kainz, B., 2018, Data Driven Treatment Response Assessment and Preterm, Perinatal, and Paediatric Image Analysis - First International Workshop, DATRA 2018 and Third International Workshop, PIPPI 2018 Held in Conjunction with MICCAI 2018, Proceedings. Melbourne, A., Aughwane, R., Robinson, E., Licandro, R., Gau, M., Kampel, M., DiFranco, M., Rota, P., Licandro, R., Moeskops, P., Schwartz, E. & Makropoulos, A. (eds.). Springer Verlag, p. 117-127 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11076 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Fast groupwise 4D deformable image registration for irregular breathing motion estimation

    Papież, B. W., McGowan, D. R., Skwarski, M., Higgins, G. S., Schnabel, J. A. & Brady, M., 2018, Biomedical Image Registration - 8th International Workshop, WBIR 2018, Proceedings. Klein, S., Sommer, S., Durrleman, S. & Staring, M. (eds.). Springer Verlag, p. 37-46 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10883 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Fully automated myocardial strain estimation from cine MRI using convolutional neural networks

    Puyol-Anton, E., Ruijsink, B., Bai, W., Langet, H., De Craene, M., Schnabel, J. A., Piro, P., King, A. P. & Sinclair, M., 23 May 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 1139-1143 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    20 Scopus citations

  • LSTM spatial co-transformer networks for registration of 3D fetal US and MR brain images

    Wright, R., Khanal, B., Gomez, A., Skelton, E., Matthew, J., Hajnal, J. V., Rueckert, D. & Schnabel, J. A., 2018, Data Driven Treatment Response Assessment and Preterm, Perinatal, and Paediatric Image Analysis - First International Workshop, DATRA 2018 and Third International Workshop, PIPPI 2018 Held in Conjunction with MICCAI 2018, Proceedings. Melbourne, A., Aughwane, R., Robinson, E., Licandro, R., Gau, M., Kampel, M., DiFranco, M., Rota, P., Licandro, R., Moeskops, P., Schwartz, E. & Makropoulos, A. (eds.). Springer Verlag, p. 149-159 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11076 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    19 Scopus citations

  • Multi-view image reconstruction: Application to fetal ultrasound compounding

    Zimmer, V. A., Gomez, A., Noh, Y., Toussaint, N., Khanal, B., Wright, R., Peralta, L., van Poppel, M., Skelton, E., Matthew, J. & Schnabel, J. A., 2018, Data Driven Treatment Response Assessment and Preterm, Perinatal, and Paediatric Image Analysis - First International Workshop, DATRA 2018 and Third International Workshop, PIPPI 2018 Held in Conjunction with MICCAI 2018, Proceedings. Melbourne, A., Aughwane, R., Robinson, E., Licandro, R., Gau, M., Kampel, M., DiFranco, M., Rota, P., Licandro, R., Moeskops, P., Schwartz, E. & Makropoulos, A. (eds.). Springer Verlag, p. 107-116 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11076 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    24 Scopus citations

  • Multiview machine learning using an atlas of cardiac cycle motion

    Puyol-Antón, E., Sinclair, M., Gerber, B., Amzulescu, M. S., Langet, H., De Craene, M., Aljabar, P., Schnabel, J. A., Piro, P. & King, A. P., 2018, Statistical Atlases and Computational Models of the Heart: ACDC and MMWHS Challenges - 8th International Workshop, STACOM 2017, Revised Selected Papers. Bernard, O., Jodoin, P.-M., Zhuang, X., Yang, G., Young, A., Sermesant, M., Lalande, A. & Pop, M. (eds.). Springer Verlag, p. 3-11 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10663 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Regional lung ventilation estimation based on supervoxel tracking

    Szmul, A., Papiez, B. W., Matin, T., Gleeson, F. V., Schnabel, J. A. & Grau, V., 2018, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Webster, R. J. (eds.). SPIE, 105761E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10576).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations

  • Weakly supervised localisation for fetal ultrasound images

    Toussaint, N., Khanal, B., Sinclair, M., Gomez, A., Skelton, E., Matthew, J. & Schnabel, J. A., 2018, Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support - 4th International Workshop, DLMIA 2018 and 8th International Workshop, ML-CDS 2018 Held in Conjunction with MICCAI 2018. Maier-Hein, L., Syeda-Mahmood, T., Taylor, Z., Lu, Z., Stoyanov, D., Madabhushi, A., Tavares, J. M. R. S., Nascimento, J. C., Moradi, M., Martel, A., Papa, J. P., Conjeti, S., Belagiannis, V., Greenspan, H., Carneiro, G. & Bradley, A. (eds.). Springer Verlag, p. 192-200 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11045 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    13 Scopus citations

  • XeMRI to CT lung image registration enhanced with personalized 4DCT-derived motion model

    Szmul, A., Matin, T., Gleeson, F. V., Schnabel, J. A., Grau, V. & Papież, B. W., 2018, Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Proceedings. Snead, D., Trucco, E., Stoyanov, D., Taylor, Z., Maier-Hein, L., Rajpoot, N., Bogunovic, H., Ciompi, F., Veta, M., Garvin, M. K., Chen, X. J., Martel, A., van der Laak, J., Xu, Y. & McKenna, S. (eds.). Springer Verlag, p. 260-271 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11040 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    2 Scopus citations
  • 2017

    Fast registration of 3D fetal ultrasound images using learned corresponding salient points

    Gomez, A., Bhatia, K., Tharin, S., Housden, J., Toussaint, N. & Schnabel, J. A., 2017, Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017 Held in Conjunction with MICCAI 2017, Proceedings. Cardoso, M. J. & Arbel, T. (eds.). Springer Verlag, p. 33-41 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10554 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    10 Scopus citations

  • Hessian-assisted supervoxel: Structure-oriented voxel clustering and application to mediastinal lymph node detection from CT volumes

    Oda, H., Bhatia, K. K., Oda, M., Kitasaka, T., Iwano, S., Homma, H., Takabatake, H., Mori, M., Natori, H., Schnabel, J. A. & Mori, K., 2017, Medical Imaging 2017: Computer-Aided Diagnosis. Petrick, N. A. & Armato, S. G. (eds.). SPIE, 101341D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10134).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Mass transportation for deformable image registration with application to lung CT

    Papież, B. W., Brady, S. M. & Schnabel, J. A., 2017, Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - 5th International Workshop, CMMI 2017 2nd International Workshop, RAMBO 2017 and 1st International Workshop, SWITCH 2017 Held in Conjunction with MICCAI 2017, Proceedings. Cardoso, M. J. & Arbel, T. (eds.). Springer Verlag, p. 66-74 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10555 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Non-local graph-based regularization for deformable image registration

    Papież, B. W., Szmul, A., Grau, V., Brady, J. M. & Schnabel, J. A., 2017, Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging - MICCAI 2016 International Workshops, MCV and BAMBI, Revised Selected Papers. Arbel, T., Langs, G., Jenkinson, M., Menze, B., Wells III, W. M., Chung, A. C. S., Kelm, B. M., Cai, W., Montillo, A., Metaxas, D., Cardoso, M. J., Zhang, S., Ribbens, A. & Muller, H. (eds.). Springer Verlag, p. 199-207 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10081 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    5 Scopus citations

  • TBS: Tensor-based supervoxels for unfolding the heart

    Oda, H., Roth, H. R., Bhatia, K. K., Oda, M., Kitasaka, T., Akita, T., Schnabel, J. A. & Mori, K., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M., Duchesne, S., Franz, A., Jannin, P., Collins, D. L. & Maier-Hein, L. (eds.). Springer Verlag, p. 681-689 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10433 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2016

    A DCE-MRI imaging-based model for simulation of vascular tumour growth

    Roque, T., Kersemans, V., Smart, S., Allen, D., Schnabel, J. A. & Chappell, M., 13 Oct 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5949-5952 4 p. 7592083. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • Graph Cuts-Based Registration Revisited: A Novel Approach for Lung Image Registration Using Supervoxels and Image-Guided Filtering

    Szmul, A., Papiez, B. W., Bates, R., Hallack, A., Schnabel, J. A. & Grau, V., 16 Dec 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 592-599 8 p. 7789570. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Regression analysis for assessment of myelination status in preterm brains with magnetic resonance imaging

    Wang, S., Kuklisova-Murgasova, M., Hajnal, J. V., Ledig, C. & Schnabel, J. A., 15 Jun 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, p. 278-281 4 p. 7493263. (Proceedings - International Symposium on Biomedical Imaging; vol. 2016-June).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    3 Scopus citations

  • Tumor Growth Estimation via Registration of DCE-MRI Derived Tumor Specific Descriptors

    Roque, T., Papiez, B. W., Kersemans, V., Smart, S., Allen, D., Chappell, M. & Schnabel, J. A., 16 Dec 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 507-515 9 p. 7789560. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2015

    Complex motion modelling in cancer imaging

    Schnabel, J., 2015, Bildverarbeitung fur die Medizin 2015: Algorithmen - Systeme - Anwendungen, Proceedings des Workshops, 2015. Deserno, T. M., Tolxdorff, T., Handels, H. & Meinzer, H.-P. (eds.). Kluwer Academic Publishers, p. 1-2 2 p. (Informatik aktuell).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Correlating tumour histology and ex vivo MRI using dense modality-independent patch-based descriptors

    Hallack, A., Papież, B. W., Wilson, J., Wang, L. M., Maughan, T., Gooding, M. J. & Schnabel, J. A., 2015, Patch-Based Techniques in Medical Imaging - First st International Workshop, Patch-MI 2015 Held in Conjunction with MICCAI 2015, Revised Selected Papers. Coupé, P., Munsell, B., Wu, G., Zhan, Y. & Rueckert, D. (eds.). Springer Verlag, p. 137-145 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9467).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Filling large discontinuities in 3D vascular networks using skeleton- and intensity-based information

    Bates, R., Risser, L., Irving, B., Papież, B. W., Kannan, P., Kersemans, V. & Schnabel, J. A., 2015, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Frangi, A. F., Navab, N., Hornegger, J. & Wells, W. M. (eds.). Springer Verlag, p. 157-164 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    4 Scopus citations

  • Liver motion estimation via locally adaptive over-segmentation regularization

    Papież, B. W., Franklin, J., Heinrich, M. P., Gleeson, F. V. & Schnabel, J. A., 2015, Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015 - 18th International Conference, Proceedings. Frangi, A. F., Navab, N., Hornegger, J. & Wells, W. M. (eds.). Springer Verlag, p. 427-434 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9351).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    21 Scopus citations
  • 2014

    A new similarity metric for groupwise registration of variable flip angle sequences for improved T10 estimation in DCE-MRI

    Hallack, A., Chappell, M. A., Gooding, M. J. & Schnabel, J. A., 2014, Biomedical Image Registration - 6th International Workshop, WBIR 2014, Proceedings. Springer Verlag, p. 154-163 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8545 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • A semi-automated toolkit for analysis of liver cancer treatment response using Perfusion CT

    Naydenova, E., Cifor, A., Hill, E., Franklin, J., Sharma, R. A. & Schnabel, J. A., 2014, Abdominal Imaging: Computational and Clinical Applications - 6th International Workshop, ABDI 2014 held in conjunction with MICCAI 2014. Yoshida, H., Näppi, J. J. & Saini, S. (eds.). Springer Verlag, p. 23-32 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8676).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Automated colorectal tumour segmentation in DCE-MRI using supervoxel neighbourhood contrast characteristics

    Irving, B., Cifor, A., Papiez, B. W., Franklin, J., Anderson, E. M., Brady, S. M. & Schnabel, J. A., 2014, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 - 17th International Conference, Proceedings. PART 1 ed. Springer Verlag, p. 609-616 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8673 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    25 Scopus citations

  • Combined PET-MR brain registration to discriminate between Alzheimer's disease and healthy controls

    Cattell, L., Schnabel, J. A., Declerck, J. & Hutton, C., 2014, Biomedical Image Registration - 6th International Workshop, WBIR 2014, Proceedings. Springer Verlag, p. 134-143 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8545 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Motion correction of intravital microscopy of preclinical lung tumour imaging using multichannel structural image descriptor

    Papiez, B. W., Tapmeier, T., Heinrich, M. P., Muschel, R. J. & Schnabel, J. A., 2014, Biomedical Image Registration - 6th International Workshop, WBIR 2014, Proceedings. Springer Verlag, p. 164-173 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8545 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Multispectral image registration based on local canonical correlation analysis

    Heinrich, M. P., Papiez, B. W., Schnabel, J. A. & Handels, H., 2014, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2014 - 17th International Conference, Proceedings. PART 1 ed. Springer Verlag, p. 202-209 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8673 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations

  • Non-parametric discrete registration with convex optimisation

    Heinrich, M. P., Papiez, B. W., Schnabel, J. A. & Handels, H., 2014, Biomedical Image Registration - 6th International Workshop, WBIR 2014, Proceedings. Springer Verlag, p. 51-61 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8545 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    25 Scopus citations
  • 2013

    A Bayesian approach for spatially adaptive regularisation in non-rigid registration

    Simpson, I. J. A., Woolrich, M. W., Cardoso, M. J., Cash, D. M., Modat, M., Schnabel, J. A. & Ourselin, S., 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 2 ed. p. 10-18 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8150 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    15 Scopus citations