Informatics 16 - Chair of Computer Aided Medical Procedures - Research output

2025

Ultrasound Report Generation With Cross-Modality Feature Alignment via Unsupervised Guidance

Li, J., Su, T., Zhao, B., Lv, F., Wang, Q., Navab, N., Hu, Y. & Jiang, Z., 2025, In: IEEE Transactions on Medical Imaging. 44, 1, p. 19-30 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

2024

3D Adversarial Augmentations for Robust Out-of-Domain Predictions

Lehner, A., Gasperini, S., Marcos-Ramiro, A., Schmidt, M., Navab, N., Busam, B. & Tombari, F., Mar 2024, In: International Journal of Computer Vision. 132, 3, p. 931-963 33 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation

Fidon, L., Aertsen, M., Kofler, F., Bink, A., David, A. L., Deprest, T., Emam, D., Guffens, F., Jakab, A., Kasprian, G., Kienast, P., Melbourne, A., Menze, B., Mufti, N., Pogledic, I., Prayer, D., Stuempflen, M., Van Elslander, E., Ourselin, S. & Deprest, J. & 1 others, Vercauteren, T., 1 May 2024, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 46, 5, p. 3784-3795 12 p., 10388220.

Research output: Contribution to journal › Article › peer-review

Open Access

9 Scopus citations

Advancing surgical VQA with scene graph knowledge

Yuan, K., Kattel, M., Lavanchy, J. L., Navab, N., Srivastav, V. & Padoy, N., 2024, (Accepted/In press) In: International Journal of Computer Assisted Radiology and Surgery.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

A Framework for Multimodal Medical Image Interaction

Schütz, L., Matinfar, S., Schafroth, G., Navab, N., Fairhurst, M., Wagner, A., Wiestler, B., Eck, U. & Navab, N., 2024, (Accepted/In press) In: IEEE Transactions on Visualization and Computer Graphics.

Research output: Contribution to journal › Article › peer-review

Open Access

Anatomy-aware computed tomography-to-ultrasound spine registration

Azampour, M. F., Tirindelli, M., Lameski, J., Gafencu, M., Tagliabue, E., Fatemizadeh, E., Hacihaliloglu, I. & Navab, N., Mar 2024, In: Medical Physics. 51, 3, p. 2044-2056 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

A new sensing paradigm for the vibroacoustic detection of pedicle screw loosening

Seibold, M., Sigrist, B., Götschi, T., Widmer, J., Hodel, S., Farshad, M., Navab, N., Fürnstahl, P. & Laux, C. J., 2024, (Accepted/In press) In: Medical & Biological Engineering & Computing.

Research output: Contribution to journal › Article › peer-review

Open Access

CACTUSS: Common Anatomical CT-US Space for US examinations

Velikova, Y., Simson, W., Azampour, M. F., Paprottka, P. & Navab, N., May 2024, In: International Journal of Computer Assisted Radiology and Surgery. 19, 5, p. 861-869 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Class-Aware Cartilage Segmentation for Autonomous US-CT Registration in Robotic Intercostal Ultrasound Imaging

Jiang, Z., Kang, Y., Bi, Y., Li, X., Li, C. & Navab, N., 2024, (Accepted/In press) In: IEEE Transactions on Automation Science and Engineering. p. 1-13 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Co-Designing Dynamic Mixed Reality Drill Positioning Widgets: A Collaborative Approach with Dentists in a Realistic Setup

Dastan, M., Fiorentino, M., Walter, E. D., Diegritz, C., Uva, A. E., Eck, U. & Navab, N., 2024, (Accepted/In press) In: IEEE Transactions on Visualization and Computer Graphics.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Development and benchmarking of a Deep Learning-based MRI-guided gross tumor segmentation algorithm for Radiomics analyses in extremity soft tissue sarcomas

Peeken, J. C., Etzel, L., Tomov, T., Münch, S., Schüttrumpf, L., Shaktour, J. H., Kiechle, J., Knebel, C., Schaub, S. K., Mayr, N. A., Woodruff, H. C., Lambin, P., Gersing, A. S., Bernhardt, D., Nyflot, M. J., Menze, B., Combs, S. E. & Navarro, F., Aug 2024, In: Radiotherapy and Oncology. 197, 110338.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

DosePatch: physics-inspired cropping layout for patch-based Monte Carlo simulations to provide fast and accurate internal dosimetry

De Benetti, F., Brosch-Lenz, J., Guerra González, J. M., Uribe, C., Eiber, M., Navab, N. & Wendler, T., Dec 2024, In: EJNMMI Physics. 11, 1, 51.

Research output: Contribution to journal › Article › peer-review

Open Access

DynaMoN: Motion-Aware Fast and Robust Camera Localization for Dynamic Neural Radiance Fields

Schischka, N., Schieber, H., Karaoglu, M. A., Gorgulu, M., Grotzner, F., Ladikos, A., Navab, N., Roth, D. & Busam, B., 2024, (Accepted/In press) In: IEEE Robotics and Automation Letters.

Research output: Contribution to journal › Article › peer-review

Open Access

EndoViT: pretraining vision transformers on a large collection of endoscopic images

Batić, D., Holm, F., Özsoy, E., Czempiel, T. & Navab, N., Jun 2024, In: International Journal of Computer Assisted Radiology and Surgery. 19, 6, p. 1085-1091 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

EyeLS: Shadow-Guided Instrument Landing System for Target Approaching in Robotic Eye Surgery

Yang, J., Zhao, Z., Shen, S., Zapp, D., Maier, M., Huang, K., Navab, N. & Nasseri, M. A., 1 Apr 2024, In: IEEE Robotics and Automation Letters. 9, 4, p. 3664-3671 8 p.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Holistic OR domain modeling: a semantic scene graph approach

Özsoy, E., Czempiel, T., Örnek, E. P., Eck, U., Tombari, F. & Navab, N., May 2024, In: International Journal of Computer Assisted Radiology and Surgery. 19, 5, p. 791-799 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Improving Self-Supervised Learning of Transparent Category Poses With Language Guidance and Implicit Physical Constraints

Wang, P., Garattoni, L., Meier, S., Navab, N. & Busam, B., 2024, In: IEEE Robotics and Automation Letters. 9, 9, p. 8114-8121 8 p.

Research output: Contribution to journal › Article › peer-review

Intelligent robotic sonographer: Mutual information-based disentangled reward learning from few demonstrations

Jiang, Z., Bi, Y., Zhou, M., Hu, Y., Burke, M. & Navab, N., Jun 2024, In: International Journal of Robotics Research. 43, 7, p. 981-1002 22 p.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Investigating pulse-echo sound speed estimation in breast ultrasound with deep learning

Simson, W. A., Paschali, M., Sideri-Lampretsa, V., Navab, N. & Dahl, J. J., Feb 2024, In: Ultrasonics. 137, 107179.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

Learning continuous shape priors from sparse data with neural implicit functions

Amiranashvili, T., Lüdke, D., Li, H. B., Zachow, S. & Menze, B. H., May 2024, In: Medical Image Analysis. 94, 103099.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

MedShapeNet - a large-scale dataset of 3D medical shapes for computer vision

Li, J., Zhou, Z., Yang, J., Pepe, A., Gsaxner, C., Luijten, G., Qu, C., Zhang, T., Chen, X., Li, W., Wodzinski, M., Friedrich, P., Xie, K., Jin, Y., Ambigapathy, N., Nasca, E., Solak, N., Melito, G. M., Vu, V. D. & Memon, A. R. & 137 others, Schlachta, C., De Ribaupierre, S., Patel, R., Eagleson, R., Chen, X., Mächler, H., Kirschke, J. S., De La Rosa, E., Christ, P. F., Li, H. B., Ellis, D. G., Aizenberg, M. R., Gatidis, S., Küstner, T., Shusharina, N., Heller, N., Andrearczyk, V., Depeursinge, A., Hatt, M., Sekuboyina, A., Löffler, M. T., Liebl, H., Dorent, R., Vercauteren, T., Shapey, J., Kujawa, A., Cornelissen, S., Langenhuizen, P., Ben-Hamadou, A., Rekik, A., Pujades, S., Boyer, E., Bolelli, F., Grana, C., Lumetti, L., Salehi, H., Ma, J., Zhang, Y., Gharleghi, R., Beier, S., Sowmya, A., Garza-Villarreal, E. A., Balducci, T., Angeles-Valdez, D., Souza, R., Rittner, L., Frayne, R., Ji, Y., Ferrari, V., Chatterjee, S., Dubost, F., Schreiber, S., Mattern, H., Speck, O., Haehn, D., John, C., Nürnberger, A., Pedrosa, J., Ferreira, C., Aresta, G., Cunha, A., Campilho, A., Suter, Y., Garcia, J., Lalande, A., Vandenbossche, V., Van Oevelen, A., Duquesne, K., Mekhzoum, H., Vandemeulebroucke, J., Audenaert, E., Krebs, C., Van Leeuwen, T., Vereecke, E., Heidemeyer, H., Röhrig, R., Hölzle, F., Badeli, V., Krieger, K., Gunzer, M., Chen, J., Van Meegdenburg, T., Dada, A., Balzer, M., Fragemann, J., Jonske, F., Rempe, M., Malorodov, S., Bahnsen, F. H., Seibold, C., Jaus, A., Marinov, Z., Jaeger, P. F., Stiefelhagen, R., Santos, A. S., Lindo, M., Ferreira, A., Alves, V., Kamp, M., Abourayya, A., Nensa, F., Hörst, F., Brehmer, A., Heine, L., Hanusrichter, Y., Weßling, M., Dudda, M., Podleska, L. E., Fink, M. A., Keyl, J., Tserpes, K., Kim, M. S., Elhabian, S., Lamecker, H., Zukić, D. E., Paniagua, B., Wachinger, C., Urschler, M., Duong, L., Wasserthal, J., Hoyer, P. F., Basu, O., Maal, T., Witjes, M. J. H., Schiele, G., Chang, T. C., Ahmadi, S. A., Luo, P., Menze, B., Reyes, M., Deserno, T. M., Davatzikos, C., Puladi, B., Fua, P., Yuille, A. L., Kleesiek, J. & Egger, J., 2024, (Accepted/In press) In: Biomedizinische Technik.

Research output: Contribution to journal › Article › peer-review

Needle Segmentation Using GAN: Restoring Thin Instrument Visibility in Robotic Ultrasound

Jiang, Z., Li, X., Chu, X., Karlas, A., Bi, Y., Cheng, Y., Au, K. W. S. & Navab, N., 2024, (Accepted/In press) In: IEEE Transactions on Instrumentation and Measurement.

Research output: Contribution to journal › Article › peer-review

Open Access

Neural deformation fields for template-based reconstruction of cortical surfaces from MRI

Bongratz, F., Rickmann, A. M. & Wachinger, C., Apr 2024, In: Medical Image Analysis. 93, 103093.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

PBPK-Adapted Deep Learning for Pre-Therapy Prediction of Voxel-Wise Dosimetry: In-Silico Proof-of-Concept

Kassar, M., Drobnjakovic, M., Birindelli, G., Xue, S., Gafita, A., Wendler, T., Afshar-Oromieh, A., Navab, N., Weber, W. A., Eiber, M., Ziegler, S., Rominger, A. & Shi, K., 2024, (Accepted/In press) In: IEEE Transactions on Radiation and Plasma Medical Sciences. p. 1 1 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Radiomics-based prediction of local control in patients with brain metastases following postoperative stereotactic radiotherapy

Buchner, J. A., Kofler, F., Mayinger, M., Christ, S. M., Brunner, T. B., Wittig, A., Menze, B., Zimmer, C., Meyer, B., Guckenberger, M., Andratschke, N., El Shafie, R. A., Debus, J., Rogers, S., Riesterer, O., Schulze, K., Feldmann, H. J., Blanck, O., Zamboglou, C. & Ferentinos, K. & 10 others, Bilger-Zähringer, A., Grosu, A. L., Wolff, R., Piraud, M., Eitz, K. A., Combs, S. E., Bernhardt, D., Rueckert, D., Wiestler, B. & Peeken, J. C., 1 Sep 2024, In: Neuro-Oncology. 26, 9, p. 1638-1650 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

ReMIND: The Brain Resection Multimodal Imaging Database

Juvekar, P., Dorent, R., Kögl, F., Torio, E., Barr, C., Rigolo, L., Galvin, C., Jowkar, N., Kazi, A., Haouchine, N., Cheema, H., Navab, N., Pieper, S., Wells, W. M., Bi, W. L., Golby, A., Frisken, S. & Kapur, T., Dec 2024, In: Scientific Data. 11, 1, 494.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

Robot-Assisted Deep Venous Thrombosis Ultrasound Examination Using Virtual Fixture

Huang, D., Yang, C., Zhou, M., Karlas, A., Navab, N. & Jiang, Z., 2024, (Accepted/In press) In: IEEE Transactions on Automation Science and Engineering. p. 1-12 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

S ² P ³: Self-Supervised Polarimetric Pose Prediction

Ruhkamp, P., Gao, D., Navab, N. & Busam, B., Jun 2024, In: International Journal of Computer Vision. 132, 6, p. 2177-2194 18 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Self-Supervised Latent Space Optimization With Nebula Variational Coding

Wang, Y., Tan, D. J., Navab, N. & Tombari, F., 1 Mar 2024, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 46, 3, p. 1397-1411 15 p.

Research output: Contribution to journal › Article › peer-review

The sound of surgery-development of an acoustic trocar system enabling laparoscopic sound analysis

Ostler-Mildner, D., Wegener, L., Fuchtmann, J., Feussner, H., Wilhelm, D. & Navab, N., Dec 2024, In: International Journal of Computer Assisted Radiology and Surgery. 19, 12, p. 2389-2397 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Toward image-based personalization of glioblastoma therapy: A clinical and biological validation study of a novel, deep learning-driven tumor growth model

Metz, M. C., Ezhov, I., Peeken, J. C., Buchner, J. A., Lipkova, J., Kofler, F., Waldmannstetter, D., Delbridge, C., Diehl, C., Bernhardt, D., Schmidt-Graf, F., Gempt, J., Combs, S. E., Zimmer, C., Menze, B. & Wiestler, B., 1 Jan 2024, In: Neuro-Oncology Advances. 6, 1, vdad171.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Ultrasound segmentation analysis via distinct and completed anatomical borders

Duque, V. G., Marquardt, A., Velikova, Y., Lacourpaille, L., Nordez, A., Crouzier, M., Lee, H. J., Mateus, D. & Navab, N., Jul 2024, In: International Journal of Computer Assisted Radiology and Surgery. 19, 7, p. 1419-1427 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Virtual reality-empowered deep-learning analysis of brain cells

Kaltenecker, D., Al-Maskari, R., Negwer, M., Hoeher, L., Kofler, F., Zhao, S., Todorov, M., Rong, Z., Paetzold, J. C., Wiestler, B., Piraud, M., Rueckert, D., Geppert, J., Morigny, P., Rohm, M., Menze, B. H., Herzig, S., Berriel Diaz, M. & Ertürk, A., 2024, (Accepted/In press) In: Nature Methods.

Research output: Contribution to journal › Article › peer-review

Open Access

8 Scopus citations

2023

Abdominal organ segmentation via deep diffeomorphic mesh deformations

Bongratz, F., Rickmann, A. M. & Wachinger, C., Dec 2023, In: Scientific Reports. 13, 1, 18270.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Aberrant allometric scaling of cortical folding in preterm-born adults

Schmitz-Koep, B., Menegaux, A., Zimmermann, J., Thalhammer, M., Neubauer, A., Wendt, J., Schinz, D., Wachinger, C., Daamen, M., Boecker, H., Zimmer, C., Priller, J., Wolke, D., Bartmann, P., Sorg, C. & Hedderich, D. M., 2023, In: Brain Communications. 5, 1, fcac341.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

A deep learning approach to predict collateral flow in stroke patients using radiomic features from perfusion images

Tetteh, G., Navarro, F., Meier, R., Kaesmacher, J., Paetzold, J. C., Kirschke, J. S., Zimmer, C., Wiest, R. & Menze, B. H., 2023, In: Frontiers in Neurology. 14, 1039693.

Research output: Contribution to journal › Article › peer-review

Open Access

7 Scopus citations

AR visualizations in laparoscopy: surgeon preferences and depth assessment of vascular anatomy

Heiliger, C., Heiliger, T., Deodati, A., Winkler, A., Grimm, M., Kalim, F., Esteban, J., Mihatsch, L., Viktor, V. H., Mohamed, K. A., Andrade, D., Frank, A., Solyanik, O., Mandal, S., Werner, J., Eck, U., Navab, N. & Karcz, K., 2023, In: Minimally Invasive Therapy and Allied Technologies. 32, 4, p. 190-198 9 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

A tool-free neuronavigation method based on single-view hand tracking

Kögl, F. V., Léger, É., Haouchine, N., Torio, E., Juvekar, P., Navab, N., Kapur, T., Pieper, S., Golby, A. & Frisken, S., 2023, In: Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. 11, 4, p. 1307-1315 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Audiovisual augmentation for coil positioning in transcranial magnetic stimulation

Schütz, L., Weber, E., Niu, W., Daniel, B., McNab, J., Navab, N. & Leuze, C., 2023, In: Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. 11, 4, p. 1158-1165 8 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Augmented reality collaborative medical displays (ARC-MeDs) for multi-user surgical planning and intra-operative communication

Song, T., Yu, K., Eck, U. & Navab, N., 2023, In: Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization. 11, 4, p. 1042-1049 8 p.

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Automated segmentation of the human supraclavicular fat depot via deep neural network in water-fat separated magnetic resonance images

Zhao, Y., Tang, C., Cui, B., Somasundaram, A., Raspe, J., Hu, X., Holzapfel, C., Junker, D., Hauner, H., Menze, B., Wu, M. & Karampinos, D., Jul 2023, In: Quantitative Imaging in Medicine and Surgery. 13, 7, p. 4699-4715 17 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Can we diagnose mental disorders in children? A large-scale assessment of machine learning on structural neuroimaging of 6916 children in the adolescent brain cognitive development study

Gaus, R., Pölsterl, S., Greimel, E., Schulte-Körne, G. & Wachinger, C., Dec 2023, In: JCPP Advances. 3, 4, e12184.

Research output: Contribution to journal › Article › peer-review

Open Access

5 Scopus citations

Chromosome Cluster Type Identification Using a Swin Transformer

Joshi, I., Mondal, A. K. & Navab, N., Jul 2023, In: Applied Sciences (Switzerland). 13, 14, 8007.

Research output: Contribution to journal › Article › peer-review

Open Access

6 Scopus citations

Computer-assisted simulated workplace-based assessment in surgery: Application of the universal framework of intraoperative performance within a mixed-reality simulation

Stefan, P., Pfandler, M., Kullmann, A., Eck, U., Koch, A., Mehren, C., Von Der Heide, A., Weidert, S., Fürmetz, J., Euler, E., Lazarovici, M., Navab, N. & Weigl, M., 19 Jan 2023, In: BMJ Surgery, Interventions, and Health Technologies. 5, 1, 000135.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Contact Endoscopy – Narrow Band Imaging (CE-NBI) data set for laryngeal lesion assessment

Esmaeili, N., Davaris, N., Boese, A., Illanes, A., Navab, N., Friebe, M. & Arens, C., Dec 2023, In: Scientific Data. 10, 1, 733.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Deep learning for the prediction of type 2 diabetes mellitus from neck-to-knee Dixon MRI in the UK biobank

Wachinger, C., Wolf, T. N. & Pölsterl, S., Nov 2023, In: Heliyon. 9, 11, e22239.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

DefCor-Net: Physics-aware ultrasound deformation correction

Jiang, Z., Zhou, Y., Cao, D. & Navab, N., Dec 2023, In: Medical Image Analysis. 90, 102923.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Scopus citations

Detecting CTP truncation artifacts in acute stroke imaging from the arterial input and the vascular output functions

de la Rosa, E., Sima, D. M., Kirschke, J. S., Menze, B. & Robben, D., Mar 2023, In: PLoS ONE. 18, 3 March, e0283610.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

Development and external validation of an MRI-based neural network for brain metastasis segmentation in the AURORA multicenter study

Buchner, J. A., Kofler, F., Etzel, L., Mayinger, M., Christ, S. M., Brunner, T. B., Wittig, A., Menze, B., Zimmer, C., Meyer, B., Guckenberger, M., Andratschke, N., El Shafie, R. A., Debus, J., Rogers, S., Riesterer, O., Schulze, K., Feldmann, H. J., Blanck, O. & Zamboglou, C. & 7 others, Ferentinos, K., Wolff, R., Eitz, K. A., Combs, S. E., Bernhardt, D., Wiestler, B. & Peeken, J. C., Jan 2023, In: Radiotherapy and Oncology. 178, 109425.

Research output: Contribution to journal › Article › peer-review

Open Access

16 Scopus citations

Differentiable Graph Module (DGM) for Graph Convolutional Networks

Kazi, A., Cosmo, L., Ahmadi, S. A., Navab, N. & Bronstein, M. M., 1 Feb 2023, In: IEEE Transactions on Pattern Analysis and Machine Intelligence. 45, 2, p. 1606-1617 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

93 Scopus citations

Informatics 16 - Chair of Computer Aided Medical Procedures

Research output

Search results