Research output per year
Research output per year
Search results
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2022
Computational Protein–Protein Docking
Zacharias, M., 1 Jan 2022, Protein Interactions: The Molecular Basis of Interactomics. wiley, p. 53-76 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Computational Tools for Accurate Binding Free-Energy Prediction
Reif, M. M. & Zacharias, M., 2022, Methods in Molecular Biology. Humana Press Inc., p. 255-292 38 p. (Methods in Molecular Biology; vol. 2385).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
Rapid Rational Design of Cyclic Peptides Mimicking Protein–Protein Interfaces
Santini, B. L. & Zacharias, M., 2022, Methods in Molecular Biology. Humana Press Inc., p. 231-244 14 p. (Methods in Molecular Biology; vol. 2405).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
2020
Prediction of protein-protein complex structures by docking
Pourjafar-Dehkordi, D. & Zacharias, M., 1 Jan 2020, Protein Interactions: Computational Methods, Analysis And Applications. World Scientific Publishing Co., p. 59-85 27 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2019
Computer Modelling and Molecular Dynamics Simulation of Biomolecules
Reif, M. & Zacharias, M., 1 Jan 2019, Biomolecular and Bioanalytical Techniques: Theory, Methodology and Applications. wiley, p. 501-535 35 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
4 Scopus citations -
2017
Application of the ATTRACT coarse-grained docking and atomistic refinement for predicting peptide-protein interactions
Schindler, C. & Zacharias, M., 2017, Methods in Molecular Biology. Humana Press Inc., p. 49-68 20 p. (Methods in Molecular Biology; vol. 1561).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Molecular dynamics and advanced sampling simulations of nucleic acids
Curuksu, J., Kannan, S. & Zacharias, M., 1 Jan 2017, Handbook of Computational Chemistry. Springer International Publishing, p. 1671-1696 26 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2015
Free Energy Calculations of Ligand–Protein Binding
Bomblies, R., Luitz, M. & Zacharias, M., 1 Jan 2015, In Silico Drug Discovery and Design: Theory, Methods, Challenges, and Applications. CRC Press, p. 313-336 24 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2014
Computational antigenic epitope prediction by calculating electrostatic desolvation penalties of protein surfaces
Fiorucci, S. & Zacharias, M., 2014, Immunoinformatics. Humana Press Inc., p. 365-374 10 p. (Methods in Molecular Biology; vol. 1184).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2012
ATTRACT and PTOOLS: Open source programs for protein-protein docking
Schneider, S., Saladin, A., Fiorucci, S., Prévost, C. & Zacharias, M., 2012, Computational Drug Discovery and Design. Baron, R. (ed.). p. 221-232 12 p. (Methods in Molecular Biology; vol. 819).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
18 Scopus citations -
Molecular dynamics and advanced sampling simulations of nucleic acids
Curuksu, J., Kannan, S. & Zacharias, M., 1 Jan 2012, Handbook of Computational Chemistry. Springer Netherlands, p. 1155-1174 20 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2010
Scoring and refinement of predicted protein–protein complexes
Zacharias, M., 1 Jan 2010, Protein-Protein Complexes: Analysis, Modeling and Drug Design. Imperial College Press, p. 236-271 36 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations