Research output per year
Research output per year
- 21 results
Search results
-
2024
Considerations for building and using integrated single-cell atlases
Hrovatin, K., Sikkema, L., Shitov, V. A., Heimberg, G., Shulman, M., Oliver, A. J., Mueller, M. F., Ibarra, I. L., Wang, H., Ramírez-Suástegui, C., He, P., Schaar, A. C., Teichmann, S. A., Theis, F. J. & Luecken, M. D., 2024, (Accepted/In press) In: Nature Methods. 101595.Research output: Contribution to journal › Review article › peer-review
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How to build the virtual cell with artificial intelligence: Priorities and opportunities
Bunne, C., Roohani, Y., Rosen, Y., Gupta, A., Zhang, X., Roed, M., Alexandrov, T., AlQuraishi, M., Brennan, P., Burkhardt, D. B., Califano, A., Cool, J., Dernburg, A. F., Ewing, K., Fox, E. B., Haury, M., Herr, A. E., Horvitz, E., Hsu, P. D. & Jain, V. & 22 others, , 12 Dec 2024, In: Cell. 187, 25, p. 7045-7063 19 p.Research output: Contribution to journal › Review article › peer-review
Open Access -
Machine learning integrative approaches to advance computational immunology
Curion, F. & Theis, F. J., Dec 2024, In: Genome Medicine. 16, 1, 80.Research output: Contribution to journal › Review article › peer-review
Open Access -
The future of rapid and automated single-cell data analysis using reference mapping
Lotfollahi, M., Yuhan Hao, H., Theis, F. J. & Satija, R., 9 May 2024, In: Cell. 187, 10, p. 2343-2358 16 p.Research output: Contribution to journal › Review article › peer-review
Open Access8 Scopus citations -
2023
Single-cell profiling to explore pancreatic cancer heterogeneity, plasticity and response to therapy
Bärthel, S., Falcomatà, C., Rad, R., Theis, F. J. & Saur, D., Apr 2023, In: Nature Cancer. 4, 4, p. 454-467 14 p.Research output: Contribution to journal › Review article › peer-review
Open Access30 Scopus citations -
2022
Spatial components of molecular tissue biology
Palla, G., Fischer, D. S., Regev, A. & Theis, F. J., Mar 2022, In: Nature Biotechnology. 40, 3, p. 308-318 11 p.Research output: Contribution to journal › Review article › peer-review
138 Scopus citations -
Toward modeling metabolic state from single-cell transcriptomics
Hrovatin, K., Fischer, D. S. & Theis, F. J., Mar 2022, In: Molecular Metabolism. 57, 101396.Research output: Contribution to journal › Review article › peer-review
Open Access29 Scopus citations -
2021
A field guide to cultivating computational biology
Way, G. P., Greene, C. S., Carninci, P., Carvalho, B. S., de Hoon, M., Finley, S., Gosline, S. J. C., Le Cao, K. A., Lee, J. S. H., Marchionni, L., Robine, N., Sindi, S. S., Theis, F. J., Yang, J. Y. H., Carpenter, A. E. & Fertig, E. J., Oct 2021, In: PLoS Biology. 19, 10, e3001419.Research output: Contribution to journal › Review article › peer-review
Open Access9 Scopus citations -
Graph representation learning for single-cell biology
Hetzel, L., Fischer, D. S., Günnemann, S. & Theis, F. J., Dec 2021, In: Current Opinion in Systems Biology. 28, 100347.Research output: Contribution to journal › Review article › peer-review
Open Access27 Scopus citations -
Künstliche Intelligenz und maschinelles Lernen in der Diabetesforschung
Translated title of the contribution :Artificial intelligence and machine learning in diabetes research Research output: Contribution to journal › Review article › peer-review
1 Scopus citations -
Machine learning for perturbational single-cell omics
Ji, Y., Lotfollahi, M., Wolf, F. A. & Theis, F. J., 16 Jun 2021, In: Cell Systems. 12, 6, p. 522-537 16 p.Research output: Contribution to journal › Review article › peer-review
Open Access58 Scopus citations -
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
Zappia, L. & Theis, F. J., Dec 2021, In: Genome Biology. 22, 1, 301.Research output: Contribution to journal › Review article › peer-review
Open Access87 Scopus citations -
RNA velocity—current challenges and future perspectives
Bergen, V., Soldatov, R. A., Kharchenko, P. V. & Theis, F. J., Aug 2021, In: Molecular Systems Biology. 17, 8, e10282.Research output: Contribution to journal › Review article › peer-review
Open Access113 Scopus citations -
2019
Concepts and limitations for learning developmental trajectories from single cell genomics
Tritschler, S., Büttner, M., Fischer, D. S., Lange, M., Bergen, V., Lickert, H. & Theis, F. J., Jun 2019, In: Development (Cambridge). 146, 12, dev170506.Research output: Contribution to journal › Review article › peer-review
Open Access130 Scopus citations -
Current best practices in single-cell RNA-seq analysis: a tutorial
Luecken, M. D. & Theis, F. J., Jun 2019, In: Molecular Systems Biology. 15, 6, e8746.Research output: Contribution to journal › Review article › peer-review
Open Access1116 Scopus citations -
Deep learning: new computational modelling techniques for genomics
Eraslan, G., Avsec, Ž., Gagneur, J. & Theis, F. J., 1 Jul 2019, In: Nature Reviews Genetics. 20, 7, p. 389-403 15 p.Research output: Contribution to journal › Review article › peer-review
706 Scopus citations -
The human lung cell atlas: A high-resolution reference map of the human lung in health and disease
Schiller, H. B., Montoro, D. T., Simon, L. M., Rawlins, E. L., Meyer, K. B., Strunz, M., Vieira Braga, F. A., Timens, W., Koppelman, G. H., Budinger, G. R. S., Burgess, J. K., Waghray, A., Van Den Berge, M., Theis, F. J., Regev, A., Kaminski, N., Rajagopal, J., Teichmann, S. A., Misharin, A. V. & Nawijn, M. C., 2019, In: American Journal of Respiratory Cell and Molecular Biology. 61, 1, p. 31-41 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access159 Scopus citations -
2018
Statistical single cell multi-omics integration
Colomé-Tatché, M. & Theis, F. J., Feb 2018, In: Current Opinion in Systems Biology. 7, p. 54-59 6 p.Research output: Contribution to journal › Review article › peer-review
Open Access58 Scopus citations -
Whither systems medicine?
Apweiler, R., Beissbarth, T., Berthold, M. R., Blüthgen, N., Burmeister, Y., Dammann, O., Deutsch, A., Feuerhake, F., Franke, A., Hasenauer, J., Hoffmann, S., Höfer, T., Jansen, P. L. M., Kaderali, L., Klingmüller, U., Koch, I., Kohlbacher, O., Kuepfer, L., Lammert, F. & Maier, D. & 12 others, , 2 Mar 2018, In: Experimental and Molecular Medicine. 50, 3, e453.Research output: Contribution to journal › Review article › peer-review
Open Access51 Scopus citations -
2017
Single cells make big data: New challenges and opportunities in transcriptomics
Angerer, P., Simon, L., Tritschler, S., Wolf, F. A., Fischer, D. & Theis, F. J., Aug 2017, In: Current Opinion in Systems Biology. 4, p. 85-91 7 p.Research output: Contribution to journal › Review article › peer-review
Open Access153 Scopus citations -
2016
Computational approaches for systems metabolomics
Krumsiek, J., Bartel, J. & Theis, F. J., 1 Jun 2016, In: Current Opinion in Biotechnology. 39, p. 198-206 9 p.Research output: Contribution to journal › Review article › peer-review
Open Access44 Scopus citations