Chair of Mathematical Modelling of Biological Systems

Filter
Conference contribution

Search results

  • 2023

    B-Cos Aligned Transformers Learn Human-Interpretable Features

    Tran, M., Lahiani, A., Dicente Cid, Y., Boxberg, M., Lienemann, P., Matek, C., Wagner, S. J., Theis, F. J., Klaiman, E. & Peng, T., 2023, Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 - 26th International Conference, Proceedings. Greenspan, H., Greenspan, H., Madabhushi, A., Mousavi, P., Salcudean, S., Duncan, J., Syeda-Mahmood, T. & Taylor, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 514-524 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14227 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    1 Scopus citations
  • 2022

    Noise Transfer for Unsupervised Domain Adaptation of Retinal OCT Images

    Koch, V., Holmberg, O., Spitzer, H., Schiefelbein, J., Asani, B., Hafner, M. & Theis, F. J., 2022, Medical Image Computing and Computer Assisted Intervention – MICCAI 2022 - 25th International Conference, Proceedings. Wang, L., Dou, Q., Fletcher, P. T., Speidel, S. & Li, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 699-708 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13432 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    7 Scopus citations

  • Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution

    Hetzel, L., Böhm, S., Kilbertus, N., Günnemann, S., Lotfollahi, M. & Theis, F., 2022, Advances in Neural Information Processing Systems 35 - 36th Conference on Neural Information Processing Systems, NeurIPS 2022. Koyejo, S., Mohamed, S., Agarwal, A., Belgrave, D., Cho, K. & Oh, A. (eds.). Neural information processing systems foundation, (Advances in Neural Information Processing Systems; vol. 35).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Sparsity in Continuous-Depth Neural Networks

    Aliee, H., Richter, T., Solonin, M., Ibarra, I., Theis, F. & Kilbertus, N., 2022, Advances in Neural Information Processing Systems 35 - 36th Conference on Neural Information Processing Systems, NeurIPS 2022. Koyejo, S., Mohamed, S., Agarwal, A., Belgrave, D., Cho, K. & Oh, A. (eds.). Neural information processing systems foundation, (Advances in Neural Information Processing Systems; vol. 35).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations
  • 2020

    Learning Tn5 Sequence Bias from ATAC-seq on Naked Chromatin

    Ansari, M., Fischer, D. S. & Theis, F. J., 2020, Artificial Neural Networks and Machine Learning – ICANN 2020 - 29th International Conference on Artificial Neural Networks, Proceedings. Farkaš, I., Masulli, P. & Wermter, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 105-114 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12396 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2018

    LNA++: Linear Noise Approximation with First and Second Order Sensitivities

    Feigelman, J., Weindl, D., Theis, F. J., Marr, C. & Hasenauer, J., 2018, Computational Methods in Systems Biology - 16th International Conference, CMSB 2018, Proceedings. Safranek, D. & Ceska, M. (eds.). Springer Verlag, p. 300-306 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11095 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2016

    Mitosis detection in intestinal crypt images with Hough forest and Conditional Random Fields

    Bortsova, G., Sterr, M., Wang, L., Milletari, F., Navab, N., Böttcher, A., Lickert, H., Theis, F. & Peng, T., 2016, Machine Learning in Medical Imaging - 7th International Workshop, MLMI 2016 held in conjunction with MICCAI 2016, Proceedings. Wang, L., Suk, H.-I., Shi, Y., Adeli, E. & Wang, Q. (eds.). Springer Verlag, p. 287-295 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10019 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
  • 2015

    An affine equivariant robust second-order BSS method

    Ilmonen, P., Nordhausen, K., Oja, H. & Theis, F., 2015, Latent Variable Analysis and Signal Separation - 12th International Conference, LVA/ICA 2015, Proceedings. Koldovský, Z., Vincent, E., Yeredor, A. & Tichavský, P. (eds.). Springer Verlag, p. 328-335 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9237).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Approximate bayesian computation for stochastic single-cell time-lapse data using multivariate test statistics

    Loos, C., Marr, C., Theis, F. J. & Hasenauer, J., 2015, Computational Methods in Systems Biology - 13th International Conference, CMSB 2015, Proceedings. Roux, O. & Bourdon, J. (eds.). Springer Verlag, p. 52-63 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9308).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    5 Scopus citations
  • 2014

    Bayesian blind source separation applied to the lymphocyte pathway

    Illner, K., Fuchs, C. & Theis, F. J., 2014, Proceedings of COMPSTAT 2014 - 21st International Conference on Computational Statistics. Gilli, M., Gonzalez-Rodriguez, G. & Nieto-Reyes, A. (eds.). The International Statistical Institute/International Association for Statistical Computing, p. 625-632 8 p. (Proceedings of COMPSTAT 2014 - 21st International Conference on Computational Statistics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Centroid clustering of cellular lineage trees

    Khakhutskyy, V., Schwarzfischer, M., Hubig, N., Plant, C., Marr, C., Rieger, M. A., Schroeder, T. & Theis, F. J., 2014, Information Technology in Bio- and Medical Informatics - 5th International Conference, ITBAM 2014, Proceedings. Springer Verlag, p. 15-29 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8649 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Modeling of stochastic biological processes with non-polynomial propensities using non-central conditional moment equation

    Kazeroonian, A., Theis, F. J. & Hasenauer, J., 2014, 19th IFAC World Congress IFAC 2014, Proceedings. Boje, E. & Xia, X. (eds.). IFAC Secretariat, p. 1729-1735 7 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 19).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    Open Access
    10 Scopus citations

  • Radial basis function approximations of bayesian parameter posterior densities for uncertainty analysis

    Fröhlich, F., Hross, S., Theis, F. J. & Hasenauer, J., 2014, Computational Methods in Systems Biology - 12th International Conference, CMSB 2014, Proceedings. Mendes, P., Dada, J. O., Smallbone, K. & Mendes, P. (eds.). Springer Verlag, p. 73-85 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8859).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Uncertainty analysis for non-identifiable dynamical systems: Profile likelihoods, bootstrapping and more

    Fröhlich, F., Theis, F. J. & Hasenauer, J., 2014, Computational Methods in Systems Biology - 12th International Conference, CMSB 2014, Proceedings. Mendes, P., Dada, J. O., Smallbone, K. & Mendes, P. (eds.). Springer Verlag, p. 61-72 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8859).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    43 Scopus citations
  • 2013

    Identifying latent dynamic components in biological systems

    Kondofersky, I., Fuchs, C. & Theis, F. J., 2013, Computational Methods in Systems Biology - 11th International Conference, CMSB 2013, Proceedings. p. 259-260 2 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8130 LNBI).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2012

    Bayesian inference of latent causes in gene regulatory dynamics

    Hug, S. & Theis, F. J., 2012, Latent Variable Analysis and Signal Separation - 10th International Conference, LVA/ICA 2012, Proceedings. p. 520-527 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7191 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Joint diagonalization of several scatter matrices for ICA

    Nordhausen, K., Gutch, H. W., Oja, H. & Theis, F. J., 2012, Latent Variable Analysis and Signal Separation - 10th International Conference, LVA/ICA 2012, Proceedings. p. 172-179 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7191 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • To infinity and beyond: On ICA over Hilbert spaces

    Gutch, H. W. & Theis, F. J., 2012, Latent Variable Analysis and Signal Separation - 10th International Conference, LVA/ICA 2012, Proceedings. p. 180-187 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7191 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 2010

    ICA over finite fields

    Gutch, H. W., Gruber, P. & Theis, F. J., 2010, Latent Variable Analysis and Signal Separation - 9th International Conference, LVA/ICA 2010, Proceedings. p. 645-652 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6365 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Robust stability analysis and design under consideration of multiple feedback loops of the tryptophan regulatory network of escherichia coli

    Meyer-Baese, A., Theis, F. & Emmett, M. R., 2010, Advances in Computational Biology. Arabnia, H. (ed.). p. 189-197 9 p. (Advances in Experimental Medicine and Biology; vol. 680).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Second-order source separation based on prior knowledge realized in a graph model

    Blöchl, F., Kowarsch, A. & Theis, F. J., 2010, Latent Variable Analysis and Signal Separation - 9th International Conference, LVA/ICA 2010, Proceedings. p. 434-441 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6365 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    12 Scopus citations

  • Second order subspace analysis and simple decompositions

    Gutch, H. W., Maehara, T. & Theis, F. J., 2010, Latent Variable Analysis and Signal Separation - 9th International Conference, LVA/ICA 2010, Proceedings. p. 370-377 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6365 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    9 Scopus citations