Research output per year
Research output per year
- 24 results
Search results
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2024
Bacteria and bacteriophage consortia are associated with protective intestinal metabolites in patients receiving stem cell transplantation
Thiele Orberg, E., Meedt, E., Hiergeist, A., Xue, J., Heinrich, P., Ru, J., Ghimire, S., Miltiadous, O., Lindner, S., Tiefgraber, M., Göldel, S., Eismann, T., Schwarz, A., Göttert, S., Jarosch, S., Steiger, K., Schulz, C., Gigl, M., Fischer, J. C. & Janssen, K. P. & 17 others, , Jan 2024, In: Nature Cancer. 5, 1, p. 187-208 22 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
Bacteriophages, gut bacteria, and microbial pathways interplay in cardiometabolic health
Kirk, D., Costeira, R., Visconti, A., Khan Mirzaei, M., Deng, L., Valdes, A. M. & Menni, C., 27 Feb 2024, In: Cell Reports. 43, 2, 113728.Research output: Contribution to journal › Review article › peer-review
Open Access2 Scopus citations -
Diet changes due to urbanization in South Africa are linked to microbiome and metabolome signatures of Westernization and colorectal cancer
Ramaboli, M. C., Ocvirk, S., Khan Mirzaei, M., Eberhart, B. L., Valdivia-Garcia, M., Metwaly, A., Neuhaus, K., Barker, G., Ru, J., Nesengani, L. T., Mahdi-Joest, D., Wilson, A. S., Joni, S. K., Layman, D. C., Zheng, J., Mandal, R., Chen, Q., Perez, M. R., Fortuin, S. & Gaunt, B. & 7 others, , Dec 2024, In: Nature Communications. 15, 1, 3379.Research output: Contribution to journal › Article › peer-review
Open Access -
2023
DeepsmirUD: Prediction of Regulatory Effects on microRNA Expression Mediated by Small Molecules Using Deep Learning
Sun, J., Ru, J., Ramos-Mucci, L., Qi, F., Chen, Z., Chen, S., Cribbs, A. P., Deng, L. & Wang, X., Feb 2023, In: International Journal of Molecular Sciences. 24, 3, 1878.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection
Luo, S., Ru, J., Mirzaei, M. K., Xue, J., Peng, X., Ralser, A., Luque, R. M., Gerhard, M. & Deng, L., 2023, In: Gut Microbes. 15, 2, 2257291.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Helicobacter pylori infection alters gut virome by expanding temperate phages linked to increased risk of colorectal cancer
Luo, S., Ru, J., Khan Mirzaei, M., Xue, J., Peng, X., Ralser, A., Hadi, J. L., Mejías-Luque, R., Gerhard, M. & Deng, L., 2023, (Accepted/In press) In: Gut. gutjnl-2023-330362.Research output: Contribution to journal › Letter › peer-review
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Helicobacter pylori promotes colorectal carcinogenesis by deregulating intestinal immunity and inducing a mucus-degrading microbiota signature
Ralser, A., Dietl, A., Jarosch, S., Engelsberger, V., Wanisch, A., Janssen, K. P., Middelhoff, M., Vieth, M., Quante, M., Haller, D., Busch, D. H., Deng, L., Mejías-Luque, R. & Gerhard, M., 1 Jul 2023, In: Gut. 72, 7, p. 1258-1270 13 p.Research output: Contribution to journal › Article › peer-review
Open Access39 Scopus citations -
Human virome in health and disease
Xue, J., Mirzaei, M. K., Costa, R., Smith, S., Tiamani, K., Ma, T. L. & Deng, L., 1 Jan 2023, Molecular Medical Microbiology, Third Edition. Elsevier, p. 2641-2658 18 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Phage Therapy in Germany—Update 2023
Willy, C., Bugert, J. J., Classen, A. Y., Deng, L., Düchting, A., Gross, J., Hammerl, J. A., Korf, I. H. E., Kühn, C., Lieberknecht-Jouy, S., Rohde, C., Rupp, M., Vehreschild, M. J. G. T., Vogele, K., Wienecke, S., Witzenrath, M., Würstle, S., Ziehr, H., Moelling, K. & Broecker, F., Feb 2023, In: Viruses. 15, 2, 588.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
Targeted Single-Phage Isolation Reveals Phage-Dependent Heterogeneous Infection Dynamics
Unterer, M., Mirzaei, M. K. & Deng, L., May 2023, In: Microbiology Spectrum. 11, 3Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Unveiling the hidden role of aquatic viruses in hydrocarbon pollution bioremediation
Ru, J., Xue, J., Sun, J., Cova, L. & Deng, L., 5 Oct 2023, In: Journal of Hazardous Materials. 459, 132299.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis
Ru, J., Khan Mirzaei, M., Xue, J., Peng, X. & Deng, L., 2023, In: Gut Microbes. 15, 1, 2192522.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
2022
Emerging technologies in the study of the virome
Smith, S. E., Huang, W., Tiamani, K., Unterer, M., Khan Mirzaei, M. & Deng, L., Jun 2022, In: Current Opinion in Virology. 54, 101231.Research output: Contribution to journal › Review article › peer-review
Open Access17 Scopus citations -
Insights into the global freshwater virome
Elbehery, A. H. A. & Deng, L., 28 Sep 2022, In: Frontiers in Microbiology. 13, 953500.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
The role of virome in the gastrointestinal tract and beyond
Tiamani, K., Luo, S., Schulz, S., Xue, J., Costa, R., Mirzaei, M. K. & Deng, L., 1 Nov 2022, In: FEMS Microbiology Reviews. 46, 6, fuac027.Research output: Contribution to journal › Review article › peer-review
Open Access19 Scopus citations -
Women in the European Virus Bioinformatics Center
Hufsky, F., Abecasis, A., Agudelo-Romero, P., Bletsa, M., Brown, K., Claus, C., Deinhardt-Emmer, S., Deng, L., Friedel, C. C., Gismondi, M. I., Kostaki, E. G., Kühnert, D., Kulkarni-Kale, U., Metzner, K. J., Meyer, I. M., Miozzi, L., Nishimura, L., Paraskevopoulou, S., Pérez-Cataluña, A. & Rahlff, J. & 8 others, , Jul 2022, In: Viruses. 14, 7, 1522.Research output: Contribution to journal › Comment/debate
Open Access1 Scopus citations -
2021
Challenges of Studying the Human Virome – Relevant Emerging Technologies
Khan Mirzaei, M., Xue, J., Costa, R., Ru, J., Schulz, S., Taranu, Z. E. & Deng, L., Feb 2021, In: Trends in Microbiology. 29, 2, p. 171-181 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access45 Scopus citations -
Corrigendum to “Using nano-attapulgite clay compounded hydrophilic urethane foams (AT/HUFs) as biofilm support enhances oil-refinery wastewater treatment in a biofilm membrane bioreactor” [Sci. Total Environ., 646 (2019) 606-17/STOTEN-D-18-03954] (Science of the Total Environment (2019) 646 (606–617), (S0048969718326354), (10.1016/j.scitotenv.2018.07.149))
Jiang, Y., Khan, A., Huang, H., Tian, Y., Yu, X., Xu, Q., Mou, L., Lv, J., Zhang, P., Liu, P., Deng, L. & Li, X., 15 Mar 2021, In: Science of the Total Environment. 760, 143189.Research output: Contribution to journal › Comment/debate
1 Scopus citations -
Sustainable Microbiome: a symphony orchestrated by synthetic phages
Khan Mirzaei, M. & Deng, L., Jan 2021, In: Microbial Biotechnology. 14, 1, p. 45-50 6 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
2020
A rigorous assessment and comparison of enumeration methods for environmental viruses
Kaletta, J., Pickl, C., Griebler, C., Klingl, A., Kurmayer, R. & Deng, L., 1 Dec 2020, In: Scientific Reports. 10, 1, 18625.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Bacteriophages Isolated from Stunted Children Can Regulate Gut Bacterial Communities in an Age-Specific Manner
Khan Mirzaei, M., Khan, M. A. A., Ghosh, P., Taranu, Z. E., Taguer, M., Ru, J., Chowdhury, R., Kabir, M. M., Deng, L., Mondal, D. & Maurice, C. F., 12 Feb 2020, In: Cell Host and Microbe. 27, 2, p. 199-212.e5Research output: Contribution to journal › Article › peer-review
Open Access87 Scopus citations -
Resilience of planktonic bacterial community structure in response to short-term weather deterioration during the growing season in an alpine lake
Ma, T., Jiang, Y., Elbehery, A. H. A., Blank, S., Kurmayer, R. & Deng, L., 1 Jan 2020, In: Hydrobiologia. 847, 2, p. 535-548 14 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
2019
Defining the human gut host–phage network through single-cell viral tagging
Džunková, M., Low, S. J., Daly, J. N., Deng, L., Rinke, C. & Hugenholtz, P., 1 Dec 2019, In: Nature Microbiology. 4, 12, p. 2192-2203 12 p.Research output: Contribution to journal › Article › peer-review
82 Scopus citations -
Using nano-attapulgite clay compounded hydrophilic urethane foams (AT/HUFs) as biofilm support enhances oil-refinery wastewater treatment in a biofilm membrane bioreactor
Jiang, Y., Khan, A., Huang, H., Tian, Y., Yu, X., Xu, Q., Mou, L., Lv, J., Zhang, P., Liu, P., Deng, L. & Li, X., 1 Jan 2019, In: Science of the Total Environment. 646, p. 606-617 12 p.Research output: Contribution to journal › Article › peer-review
32 Scopus citations