SFC-based communication metadata encoding for adaptive mesh refinement

Martin Schreiber, Tobias Weinzierl, Hans Joachim Bungartz

Publikation: Beitrag in Buch/Bericht/KonferenzbandKonferenzbeitragBegutachtung

4 Zitate (Scopus)

Abstract

The present paper studies two adaptive mesh refinement (AMR) codes whose grids rely on recursive subdivison in combination with space-filling curves (SFCs). A non-overlapping domain decomposition based upon these SFCs yields several well-known advantageous properties with respect to communication demands, balancing, and partition connectivity. However, the administration of the meta data, i.e. to track which partitions exchange data in which cardinality, is non-trivial due to the SFC's fractal meandering and the dynamic adaptivity. We introduce an analysed tree grammar for the meta data that restricts it without loss of information hierarchically along the subdivision tree and applies run length encoding. Hence, its meta data memory footprint is very small, and it can be computed and maintained on-the-fly even for permanently changing grids. It facilitates a fork-join pattern for shared data parallelism. And it facilitates replicated data parallelism tackling latency and bandwidth constraints respectively due to communication in the background and reduces memory requirements by avoiding adjacency information stored per element. We demonstrate this at hands of shared and distributed parallelized domain decompositions.

OriginalspracheEnglisch
TitelParallel Computing
UntertitelAccelerating Computational Science and Engineering (CSE)
Herausgeber (Verlag)IOS Press BV
Seiten233-242
Seitenumfang10
ISBN (Print)9781614993803
DOIs
PublikationsstatusVeröffentlicht - 2014
Extern publiziertJa

Publikationsreihe

NameAdvances in Parallel Computing
Band25
ISSN (Print)0927-5452

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