TY - JOUR
T1 - Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida
AU - Kremling, Andreas
AU - Pflüger-Grau, Katharina
AU - Chavarría, Max
AU - Puchalka, Jacek
AU - dos Santos, Vitor Martins
AU - Lorenzo, Víctor de
N1 - Funding Information:
AK was funded in part by the FORSYS initiative from the German Federal Ministry of Education and Research (BMBF).
PY - 2012/12/6
Y1 - 2012/12/6
N2 - Background: Signal transduction plays a fundamental role in the understanding of cellular physiology. The bacterial phosphotransferase system (PTS) together with the PEP/pyruvate node in central metabolism represents a signaling unit that acts as a sensory element and measures the activity of the central metabolism. Pseudomonas putida possesses two PTS branches, the C-branch (PTSFru) and a second branch (PTSNtr), which communicate with each other by phosphate exchange. Recent experimental results showed a cross talk between the two branches. However, the functional role of the crosstalk remains open.Results: A mathematical model was set up to describe the available data of the state of phosphorylation of PtsN, one of the PTS proteins, for different environmental conditions and different strain variants. Additionally, data from flux balance analysis was used to determine some of the kinetic parameters of the involved reactions. Based on the calculated and estimated parameters, the flux distribution during growth of the wild type strain on fructose could be determined.Conclusion: Our calculations show that during growth of the wild type strain on the PTS substrate fructose, the major part of the phosphoryl groups is provided by the second branch of the PTS. This theoretical finding indicates a new role of the second branch of the PTS and will serve as a basis for further experimental studies.
AB - Background: Signal transduction plays a fundamental role in the understanding of cellular physiology. The bacterial phosphotransferase system (PTS) together with the PEP/pyruvate node in central metabolism represents a signaling unit that acts as a sensory element and measures the activity of the central metabolism. Pseudomonas putida possesses two PTS branches, the C-branch (PTSFru) and a second branch (PTSNtr), which communicate with each other by phosphate exchange. Recent experimental results showed a cross talk between the two branches. However, the functional role of the crosstalk remains open.Results: A mathematical model was set up to describe the available data of the state of phosphorylation of PtsN, one of the PTS proteins, for different environmental conditions and different strain variants. Additionally, data from flux balance analysis was used to determine some of the kinetic parameters of the involved reactions. Based on the calculated and estimated parameters, the flux distribution during growth of the wild type strain on fructose could be determined.Conclusion: Our calculations show that during growth of the wild type strain on the PTS substrate fructose, the major part of the phosphoryl groups is provided by the second branch of the PTS. This theoretical finding indicates a new role of the second branch of the PTS and will serve as a basis for further experimental studies.
KW - Flux Balance Analysis (FBA)
KW - Kinetic modelling
KW - Metabolic Control Analysis (MCA)
KW - Phosphotransferase System (PTS)
UR - http://www.scopus.com/inward/record.url?scp=84870404043&partnerID=8YFLogxK
U2 - 10.1186/1752-0509-6-149
DO - 10.1186/1752-0509-6-149
M3 - Article
C2 - 23216700
AN - SCOPUS:84870404043
SN - 1752-0509
VL - 6
JO - BMC Systems Biology
JF - BMC Systems Biology
M1 - 149
ER -