TY - JOUR
T1 - Deep learning
T2 - new computational modelling techniques for genomics
AU - Eraslan, Gökcen
AU - Avsec, Žiga
AU - Gagneur, Julien
AU - Theis, Fabian J.
N1 - Publisher Copyright:
© 2019, Springer Nature Limited.
PY - 2019/7/1
Y1 - 2019/7/1
N2 - As a data-driven science, genomics largely utilizes machine learning to capture dependencies in data and derive novel biological hypotheses. However, the ability to extract new insights from the exponentially increasing volume of genomics data requires more expressive machine learning models. By effectively leveraging large data sets, deep learning has transformed fields such as computer vision and natural language processing. Now, it is becoming the method of choice for many genomics modelling tasks, including predicting the impact of genetic variation on gene regulatory mechanisms such as DNA accessibility and splicing.
AB - As a data-driven science, genomics largely utilizes machine learning to capture dependencies in data and derive novel biological hypotheses. However, the ability to extract new insights from the exponentially increasing volume of genomics data requires more expressive machine learning models. By effectively leveraging large data sets, deep learning has transformed fields such as computer vision and natural language processing. Now, it is becoming the method of choice for many genomics modelling tasks, including predicting the impact of genetic variation on gene regulatory mechanisms such as DNA accessibility and splicing.
UR - http://www.scopus.com/inward/record.url?scp=85064253268&partnerID=8YFLogxK
U2 - 10.1038/s41576-019-0122-6
DO - 10.1038/s41576-019-0122-6
M3 - Review article
C2 - 30971806
AN - SCOPUS:85064253268
SN - 1471-0056
VL - 20
SP - 389
EP - 403
JO - Nature Reviews Genetics
JF - Nature Reviews Genetics
IS - 7
ER -