TY - JOUR
T1 - A Learnable Prior Improves Inverse Tumor Growth Modeling
AU - Weidner, Jonas
AU - Ezhov, Ivan
AU - Balcerak, Michal
AU - Metz, Marie Christin
AU - Litvinov, Sergey
AU - Kaltenbach, Sebastian
AU - Feiner, Leonhard
AU - Lux, Laurin
AU - Kofler, Florian
AU - Lipkova, Jana
AU - Latz, Jonas
AU - Rueckert, Daniel
AU - Menze, Bjoern
AU - Wiestler, Benedikt
N1 - Publisher Copyright:
© 1982-2012 IEEE.
PY - 2024
Y1 - 2024
N2 - Biophysical modeling, particularly involving partial differential equations (PDEs), offers significant potential for tailoring disease treatment protocols to individual patients. However, the inverse problem-solving aspect of these models presents a substantial challenge, either due to the high computational requirements of model-based approaches or the limited robustness of deep learning (DL) methods. We propose a novel framework that leverages the unique strengths of both approaches in a synergistic manner. Our method incorporates a DL ensemble for initial parameter estimation, facilitating efficient downstream evolutionary sampling initialized with this DL-based prior. We showcase the effectiveness of integrating a rapid deep-learning algorithm with a high-precision evolution strategy in estimating brain tumor cell concentrations from magnetic resonance images. The DL-Prior plays a pivotal role, significantly constraining the effective sampling-parameter space. This reduction results in a fivefold convergence acceleration and a Dice-score of 95%.
AB - Biophysical modeling, particularly involving partial differential equations (PDEs), offers significant potential for tailoring disease treatment protocols to individual patients. However, the inverse problem-solving aspect of these models presents a substantial challenge, either due to the high computational requirements of model-based approaches or the limited robustness of deep learning (DL) methods. We propose a novel framework that leverages the unique strengths of both approaches in a synergistic manner. Our method incorporates a DL ensemble for initial parameter estimation, facilitating efficient downstream evolutionary sampling initialized with this DL-based prior. We showcase the effectiveness of integrating a rapid deep-learning algorithm with a high-precision evolution strategy in estimating brain tumor cell concentrations from magnetic resonance images. The DL-Prior plays a pivotal role, significantly constraining the effective sampling-parameter space. This reduction results in a fivefold convergence acceleration and a Dice-score of 95%.
KW - CMA-ES
KW - evolutionary sampling
KW - Individualized brain tumor modeling
KW - inverse biophysics
KW - learnable prior
KW - MRI
UR - http://www.scopus.com/inward/record.url?scp=85210182657&partnerID=8YFLogxK
U2 - 10.1109/TMI.2024.3494022
DO - 10.1109/TMI.2024.3494022
M3 - Article
C2 - 39514352
AN - SCOPUS:85210182657
SN - 0278-0062
JO - IEEE Transactions on Medical Imaging
JF - IEEE Transactions on Medical Imaging
ER -