Professur für Pflanzenepigenomik

Publikationen

Publikationen pro Jahr 1982 1994 1998 2008 2016 2018 2019 2020 2021 2022 2023 2024 2024

• 35 Artikel
• 12 Konferenzbeitrag
• 9 Übersichtsartikel
• 8 Konferenzartikel
• 12 Mehr
  • 6 Papier
  • 4 Kommentar/Debatte
  • 2 Leitartikel

Publikationen pro Jahr

Publikationen pro Jahr

Suchergebnisse

• 2024

  DNA methylation remodeling in F1 hybrids

  Kakoulidou, I. & Johannes, F., Mai 2024, in: Plant Journal. 118, 3, S. 671-681 11 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • DNA Methylation (DNAm) 100%
  • F1 Hybrids 100%
  • F1 Hybrid 100%
  • DNA Methylation 100%
  • Parental Lines 66%
  6 Zitate (Scopus)

• GenomicLinks: Deep learning predictions of 3D chromatin interactions in the maize genome

  Schlegel, L., Bhardwaj, R., Shahryary, Y., Demirtürk, D., Marand, A. P., Schmitz, R. J. & Johannes, F., 1 Sept. 2024, in: NAR Genomics and Bioinformatics. 6, 3, lqae123.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

• Improved inference of population histories by integrating genomic and epigenomic data

  Sellinger, T., Johannes, F. & Tellier, A., 12 Sept. 2024, in: eLife. 12

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Single Nucleotide Polymorphism 100%
  • Genomics 100%
  • Epigenetic Marker 100%
  • Hypermutable 66%
  • Finite-sites Model 33%

• Mapping parental DMRs predictive of local and distal methylome remodeling in epigenetic F1 hybrids

  Kakoulidou, I., Piecyk, R. S., Meyer, R. C., Kuhlmann, M., Gutjahr, C., Altmann, T. & Johannes, F., Apr. 2024, in: Life Science Alliance. 7, 4, e202402599.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Epigenetics 100%
  • F1 Hybrids 100%
  • Differentially Methylated Regions 100%
  • Methylome 100%
  • Pericentromere 100%
  1 Zitat (Scopus)

• Somatic epigenetic drift during shoot branching: a cell lineage-based model

  Chen, Y., Burian, A. & Johannes, F., Aug. 2024, in: Genetics. 227, 4, iyae091.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Cell Lineage 100%
  • Shoot Apical Meristem 100%
  • Shoot Branching 100%
  • Epigenetic Drift 100%
  • Epigenetics 100%

• Time's up: Epigenetic clocks in plants

  Vo, B. T., Mas, P. & Johannes, F., Okt. 2024, in: Current Opinion in Plant Biology. 81, 102602.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Lineages 100%
  • Circadian Rhythm 100%
  • Lifespan 100%
  • DNA Methylation 100%
  • Epigenetic Clock 100%
• 2023

  An evolutionary epigenetic clock in plants

  Yao, N., Zhang, Z., Yu, L., Hazarika, R., Yu, C., Jang, H., Smith, L. M., Ton, J., Liu, L., Stachowicz, J. J., Reusch, T. B. H., Schmitz, R. J. & Johannes, F., 29 Sept. 2023, in: Science. 381, 6665, S. 1440-1445 6 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • DNA Sequencing 100%
  • Epigenetic Clock 100%
  • Epimutation 100%
  • Evolutionary Epigenetics 100%
  • Epigenetics 100%
  17 Zitate (Scopus)

• Editorial: DNA methylation in plants associated with abiotic stress, volume II

  Kuhlmann, M., Jiang, H., Catoni, M. & Johannes, F., 2023, in: Frontiers in Plant Science. 14, 1203806.

  Publikation: Beitrag in Fachzeitschrift › Leitartikel

  Open Access

• Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

  Agius, D. R., Kapazoglou, A., Avramidou, E., Baranek, M., Carneros, E., Caro, E., Castiglione, S., Cicatelli, A., Radanovic, A., Ebejer, J. P., Gackowski, D., Guarino, F., Gulyás, A., Hidvégi, N., Hoenicka, H., Inácio, V., Johannes, F., Karalija, E., Lieberman-Lazarovich, M. & Martinelli, F. &9 mehr, Maury, S., Mladenov, V., Morais-Cecílio, L., Pecinka, A., Tani, E., Testillano, P. S., Todorov, D., Valledor, L. & Vassileva, V., 2023, in: Frontiers in Plant Science. 14, 1181039.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Epigenome 100%
  • DNA Methylation (DNAm) 100%
  • Profiling Techniques 100%
  • DNA Methylation Profiling 100%
  • DNA Methylation 100%
  12 Zitate (Scopus)

• Stochasticity in gene body methylation

  Goeldel, C. & Johannes, F., Okt. 2023, in: Current Opinion in Plant Biology. 75, 102436.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  • Gene Methylation 100%
  • Stochasticity 100%
  • Methylation 100%
  • Methylation Status 33%
  • Epigenetics 28%
  3 Zitate (Scopus)
• 2022

  Epigenomics in trees: decoding the plastic lives of mangroves

  Johannes, F., März 2022, in: New Phytologist. 233, 5, S. 1971-1973 3 S.

  Publikation: Beitrag in Fachzeitschrift › Kommentar/Debatte

  Open Access
  1 Zitat (Scopus)

• Mass spectrometry-based draft of the mouse proteome

  Giansanti, P., Samaras, P., Bian, Y., Meng, C., Coluccio, A., Frejno, M., Jakubowsky, H., Dobiasch, S., Hazarika, R. R., Rechenberger, J., Calzada-Wack, J., Krumm, J., Mueller, S., Lee, C. Y., Wimberger, N., Lautenbacher, L., Hassan, Z., Chang, Y. C., Falcomatà, C. & Bayer, F. P. &11 mehr, Bärthel, S., Schmidt, T., Rad, R., Combs, S. E., The, M., Johannes, F., Saur, D., de Angelis, M. H., Wilhelm, M., Schneider, G. & Kuster, B., Juli 2022, in: Nature Methods. 19, 7, S. 803-811 9 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Mass Spectrometry 100%
  • Mouse Proteome 100%
  • Proteome 100%
  • Gene Regulation 33%
  • Orthologs 33%
  26 Zitate (Scopus)

• MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data

  Hüther, P., Hagmann, J., Nunn, A., Kakoulidou, I., Pisupati, R., Langenberger, D., Weigel, D., Johannes, F., Schultheiss, S. J. & Becker, C., 26 Sept. 2022, in: Quantitative Plant Biology. 3, e19.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Context-aware 100%
  • Sequence Data 100%
  • Population Scale 100%
  • Differentially Methylated Regions 100%
  • Whole-genome Bisulfite Sequencing 100%
  8 Zitate (Scopus)

• Molecular properties of epimutation hotspots

  Hazarika, R. R., Serra, M., Zhang, Z., Zhang, Y., Schmitz, R. J. & Johannes, F., Feb. 2022, in: Nature Plants. 8, 2, S. 146-156 11 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Molecular Properties 100%
  • Epimutation 100%
  • Methylation 57%
  • Steady State 28%
  • Molecular Mechanism 14%
  20 Zitate (Scopus)

• Predicting 3D chromatin interactions from DNA sequence using Deep Learning

  Piecyk, R. S., Schlegel, L. & Johannes, F., Jan. 2022, in: Computational and Structural Biotechnology Journal. 20, S. 3439-3448 10 S.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Deep Learning Model 100%
  • Deep Learning 100%
  • DNA Sequencing 100%
  • 3D Chromatin Interaction 100%
  • DNA Sequence 100%
  9 Zitate (Scopus)
• 2021

  Editorial: DNA Methylation in Plants Associated With Abiotic Stress

  Kuhlmann, M., Jiang, H., Catoni, M. & Johannes, F., 18 Okt. 2021, in: Frontiers in Plant Science. 12, 778004.

  Publikation: Beitrag in Fachzeitschrift › Leitartikel

  Open Access
  2 Zitate (Scopus)

• Epigenetics for crop improvement in times of global change

  Kakoulidou, I., Avramidou, E. V., Baránek, M., Brunel‐muguet, S., Farrona, S., Johannes, F., Kaiserli, E., Lieberman‐lazarovich, M., Martinelli, F., Mladenov, V., Testillano, P. S., Vassileva, V. & Maury, S., 2021, in: Biology. 10, 8, 766.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Epigenetics 100%
  • Global Change 100%
  • Crop Improvement 100%
  • Epigenomics 100%
  • Climate Change 66%
  63 Zitate (Scopus)

• Epimutations Define a Fast-Ticking Molecular Clock in Plants

  Yao, N., Schmitz, R. J. & Johannes, F., Aug. 2021, in: Trends in Genetics. 37, 8, S. 699-710 12 S.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Molecular Clock 100%
  • Epimutation 100%
  • Mathematical Model 25%
  • DNA Methylation (DNAm) 25%
  • Cell Division 25%
  20 Zitate (Scopus)

• Heterochromatin is a quantitative trait associated with spontaneous epiallele formation

  Zhang, Y., Jang, H., Xiao, R., Kakoulidou, I., Piecyk, R. S., Johannes, F. & Schmitz, R. J., Dez. 2021, in: Nature Communications. 12, 1, 6958.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Epiallele 100%
  • Quantitative Traits 100%
  • Heterochromatin 100%
  • Quantitative Trait 100%
  • Feedback Regulation 75%
  18 Zitate (Scopus)

• Region-level epimutation rates in Arabidopsis thaliana

  Denkena, J., Johannes, F. & Colomé-Tatché, M., Aug. 2021, in: Heredity. 127, 2, S. 190-202 13 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Arabidopsis Thaliana 100%
  • Region Level 100%
  • Epimutation 100%
  • Epimutation Rate 100%
  • Arabidopsis thaliana 100%
  19 Zitate (Scopus)
• 2020

  A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

  Hofmeister, B. T., Denkena, J., Colomé-Tatché, M., Shahryary, Y., Hazarika, R., Grimwood, J., Mamidi, S., Jenkins, J., Grabowski, P. P., Sreedasyam, A., Shu, S., Barry, K., Lail, K., Adam, C., Lipzen, A., Sorek, R., Kudrna, D., Talag, J., Wing, R. & Hall, D. W. &5 mehr, Jacobsen, D., Tuskan, G. A., Schmutz, J., Johannes, F. & Schmitz, R. J., 6 Okt. 2020, in: Genome Biology. 21, 1, 259.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Mutation Rate 100%
  • Genetic mutation 100%
  • Genome Assembly 100%
  • Somatic Genetics 100%
  • Populus Trichocarpa 100%
  66 Zitate (Scopus)

• AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

  Shahryary, Y., Symeonidi, A., Hazarika, R. R., Denkena, J., Mubeen, T., Hofmeister, B., Van Gurp, T., Colomé-Tatché, M., Verhoeven, K. J. F., Tuskan, G., Schmitz, R. J. & Johannes, F., 6 Okt. 2020, in: Genome Biology. 21, 1, 260.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • High-throughput 100%
  • DNA Methylation Data 100%
  • Epimutation 100%
  • Computational Inference 100%
  • Epimutation Rate 100%
  23 Zitate (Scopus)

• Author Correction: Widespread long-range cis-regulatory elements in the maize genome (Nature Plants, (2019), 5, 12, (1237-1249), 10.1038/s41477-019-0547-0)

  Ricci, W. A., Lu, Z., Ji, L., Marand, A. P., Ethridge, C. L., Murphy, N. G., Noshay, J. M., Galli, M., Mejía-Guerra, M. K., Colomé-Tatché, M., Johannes, F., Rowley, M. J., Corces, V. G., Zhai, J., Scanlon, M. J., Buckler, E. S., Gallavotti, A., Springer, N. M., Schmitz, R. J. & Zhang, X., 1 März 2020, in: Nature Plants. 6, 3, S. 328 1 S.

  Publikation: Beitrag in Fachzeitschrift › Kommentar/Debatte

  Open Access

  • Cis-regulatory Elements 100%
  • Maize Genome 100%
  • HiChIP 100%
  • Regulatory Sequence 100%
  • H3K27me3 50%

• Mass-spectrometry-based draft of the Arabidopsis proteome

  Mergner, J., Frejno, M., List, M., Papacek, M., Chen, X., Chaudhary, A., Samaras, P., Richter, S., Shikata, H., Messerer, M., Lang, D., Altmann, S., Cyprys, P., Zolg, D. P., Mathieson, T., Bantscheff, M., Hazarika, R. R., Schmidt, T., Dawid, C. & Dunkel, A. &12 mehr, Hofmann, T., Sprunck, S., Falter-Braun, P., Johannes, F., Mayer, K. F. X., Jürgens, G., Wilhelm, M., Baumbach, J., Grill, E., Schneitz, K., Schwechheimer, C. & Kuster, B., 19 März 2020, in: Nature. 579, 7799, S. 409-414 6 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  • Mass Spectrometry 100%
  • Proteome 100%
  • Arabidopsis 100%
  • Dynamic Range 50%
  • Order of Magnitude 50%
  292 Zitate (Scopus)

• MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data

  Shahryary, Y., Hazarika, R. R. & Johannes, F., 13 Juli 2020, in: BMC Genomics. 21, 1, 479.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Sequence Data 100%
  • Preprocessing pipeline 100%
  • Robust Preprocessing 100%
  • Whole-genome Bisulfite Sequencing 100%
  • Volume 100%
  14 Zitate (Scopus)

• Recursive convolutional neural networks for epigenomics

  Symeonidi, A., Nicolaou, A., Johannes, F. & Christlein, V., 2020, Proceedings of ICPR 2020 - 25th International Conference on Pattern Recognition. Institute of Electrical and Electronics Engineers Inc., S. 2567-2574 8 S. 9412272. (Proceedings - International Conference on Pattern Recognition).

  Publikation: Beitrag in Buch/Bericht/Konferenzband › Konferenzbeitrag › Begutachtung

  Open Access

  • Epigenomics 100%
  • Recursive Convolutional Neural Networks 100%
  • Convolutional Neural Network 100%
  • Deep Learning Methods 33%
  • Order of Magnitude 33%
  5 Zitate (Scopus)
• 2019

  DNA methylation makes mutational history

  Johannes, F., 1 Aug. 2019, in: Nature Plants. 5, 8, S. 772-773 2 S.

  Publikation: Beitrag in Fachzeitschrift › Kommentar/Debatte
  1 Zitat (Scopus)

• Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

  Kooke, R., Morgado, L., Becker, F., Van Eekelen, H., Hazarika, R., Zheng, Q., De Vos, R. C. H., Johannes, F. & Keurentjes, J. J. B., Jan. 2019, in: Genome Research. 29, 1, S. 96-106 11 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Metabolomics 100%
  • Arabidopsis 100%
  • Epigenetic Variation 100%
  • Epigenotype 100%
  • Epigenetic Mapping 100%
  31 Zitate (Scopus)

• Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation

  Wendte, J. M., Zhang, Y., Ji, L., Shi, X., Hazarika, R. R., Shahryary, Y., Johannes, F. & Schmitz, R. J., Juli 2019, in: eLife. 8, e47891.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • DNA Methylation (DNAm) 100%
  • Gene Methylation 100%
  • Epimutation 100%
  • Methylation 100%
  • DNA Methylation 100%
  49 Zitate (Scopus)

• Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis

  Furci, L., Jain, R., Stassen, J., Berkowitz, O., Whelan, J., Roquis, D., Baillet, V., Colot, V., Johannes, F. & Ton, J., 2019, in: eLife. 8, e40655.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • DNA Methylation (DNAm) 100%
  • Hypomethylating Agents 100%
  • Arabidopsis 100%
  • Quantitative Resistance 100%
  • DNA Locus 100%
  67 Zitate (Scopus)

• Spontaneous epimutations in plants

  Johannes, F. & Schmitz, R. J., 1 Feb. 2019, in: New Phytologist. 221, 3, S. 1253-1259 7 S.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Epimutation 100%
  • Methylation 66%
  • Functional Consequences 33%
  • Epigenome 33%
  • DNA Methylation Age 33%
  62 Zitate (Scopus)

• Widespread long-range cis-regulatory elements in the maize genome

  Ricci, W. A., Lu, Z., Ji, L., Marand, A. P., Ethridge, C. L., Murphy, N. G., Noshay, J. M., Galli, M., Mejía-Guerra, M. K., Colomé-Tatché, M., Johannes, F., Rowley, M. J., Corces, V. G., Zhai, J., Scanlon, M. J., Buckler, E. S., Gallavotti, A., Springer, N. M., Schmitz, R. J. & Zhang, X., 1 Dez. 2019, in: Nature Plants. 5, 12, S. 1237-1249 13 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Cis-regulatory Elements 100%
  • Maize Genome 100%
  • Regulatory Sequence 100%
  • Enhancer Activity 20%
  • Gene Expression 20%
  214 Zitate (Scopus)
• 2018

  Computational tools for plant small RNA detection and categorization

  Morgado, L. & Johannes, F., 27 März 2018, in: Briefings in Bioinformatics. 20, 4, S. 1181-1192 12 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Small Interfering RNA (siRNA) 100%
  • Computational Tools 100%
  • RNA Detection 100%
  • Plant Small RNA 100%
  • RNA 100%
  22 Zitate (Scopus)

• METHimpute: Imputation-guided construction of complete methylomes from WGBS data

  Taudt, A., Roquis, D., Vidalis, A., Wardenaar, R., Johannes, F. & Colome-Tatché-Tatché, M., 7 Juni 2018, in: BMC Genomics. 19, 1, 444.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Sequence Data 100%
  • Methylome 100%
  • Whole-genome Bisulfite Sequencing 100%
  • Bisulfite Sequencing 100%
  • Cytosine 66%
  21 Zitate (Scopus)

• Parental DNA methylation states are associated with heterosis in epigenetic hybrids

  Lauss, K., Wardenaar, R., Oka, R., van Hulten, M. H. A., Guryev, V., Keurentjes, J. J. B., Stam, M. & Johannes, F., Feb. 2018, in: Plant Physiology. 176, 2, S. 1627-1645 19 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Epigenetics 100%
  • DNA Methylation (DNAm) 100%
  • Methylation Status 100%
  • Heterosis 100%
  • DNA Methylation 100%
  83 Zitate (Scopus)
• 2017

  Erratum to: Methylome Evolution in plants. [Genome Biol. 17, (2016), (264)] DOI: 10.1186/s13059-016-1127-5

  Vidalis, A., Živković, D., Wardenaar, R., Roquis, D., Tellier, A. & Johannes, F., 27 Feb. 2017, in: Genome Biology. 18, 1, 41.

  Publikation: Beitrag in Fachzeitschrift › Kommentar/Debatte

  Open Access

  • Methylome 100%
  • Centromere 100%
  • Chromosome 3 100%
  • 2,5-Dimethoxy-4-iodoamphetamine 100%
  • Cytosine 100%

• Small RNAs reflect grandparental environments in apomictic dandelion

  Morgado, L., Preite, V., Oplaat, C., Anava, S., De Carvalho, J. F., Rechavi, O., Johannes, F. & Verhoeven, K. J. F., 1 Aug. 2017, in: Molecular Biology and Evolution. 34, 8, S. 2035-2040 6 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Small Interfering RNA (siRNA) 100%
  • Apomictic 100%
  • Dandelion 100%
  • RNA 100%
  • Epigenetics 33%
  23 Zitate (Scopus)
• 2016

  Genetic sources of population epigenomic variation

  Taudt, A., Colomé-Tatché, M. & Johannes, F., 1 Juni 2016, in: Nature Reviews Genetics. 17, 6, S. 319-332 14 S.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  • Epigenomics 100%
  • Genetic Source 100%
  • Genetics 100%
  • Epigenetics 66%
  • Epigenome 33%
  114 Zitate (Scopus)

• Methylome evolution in plants

  Vidalis, A., Živković, D., Wardenaar, R., Roquis, D., Tellier, A. & Johannes, F., 20 Dez. 2016, in: Genome Biology. 17, 1, 264.

  Publikation: Beitrag in Fachzeitschrift › Übersichtsartikel › Begutachtung

  Open Access

  • Methylome 100%
  • Evolution 50%
  • Short Time Scale 25%
  • DNA Methylation Pattern 25%
  • Molecular Pathways 25%
  90 Zitate (Scopus)

• Quantitative trait locus analysis of mating behavior and male sex pheromones in Nasonia wasps

  Diao, W., Mousset, M., Horsburgh, G. J., Vermeulen, C. J., Johannes, F., van de Zande, L., Ritchie, M. G., Schmitt, T. & Beukeboom, L. W., 2016, in: G3: Genes, Genomes, Genetics. 6, 6, S. 1549-1562 14 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Quantitative Trait Loci Analysis 100%
  • Wasp 100%
  • Mating Behavior 100%
  • Nasonia 100%
  • Oneida 100%
  8 Zitate (Scopus)

• Signatures of Dobzhansky–Muller incompatibilities in the genomes of recombinant inbred lines

  Colomé-Tatché, M. & Johannes, F., Feb. 2016, in: Genetics. 202, 2, S. 825-841 17 S.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  Open Access

  • Recombinant Inbred Lines 100%
  • Recombinant Inbred Strain 100%
  • Maximum Likelihood Method 33%
  • Linkage Disequilibrium 33%
  • Epistasis 33%
  9 Zitate (Scopus)
• 2008

  Abacus: Fast legalization of standard cell circuits with minimal movement

  Spindler, P., Schlichtmann, U. & Johannes, F. M., 2008, ISPD'08 - Proceedings of the 2008 ACM International Symposium on Physical Design. S. 47-53 7 S. (Proceedings of the International Symposium on Physical Design).

  Publikation: Beitrag in Buch/Bericht/Konferenzband › Konferenzbeitrag › Begutachtung

  • Cellular Circuits 100%
  • Abacus 100%
  • Global Placement 100%
  • Dynamic Programming 100%
  • Wirelength 40%
  137 Zitate (Scopus)

• Deterministic analog circuit placement using hierarchically bounded enumeration and enhanced shape functions

  Strasser, M., Eick, M., Gräb, H., Schlichtmann, U. & Johannes, F. M., 2008, 2008 IEEE/ACM International Conference on Computer-Aided Design Digest of Technical Papers, ICCAD 2008. S. 306-313 8 S. 4681591. (IEEE/ACM International Conference on Computer-Aided Design, Digest of Technical Papers, ICCAD).

  Publikation: Beitrag in Buch/Bericht/Konferenzband › Konferenzbeitrag › Begutachtung

  Open Access

  • Shape Function 100%
  • Analog Circuits 100%
  • Placement Algorithm 100%
  • Basic Building Block 100%
  • Analog Placement 100%
  67 Zitate (Scopus)

• Kraftwerk2 - A fast force-directed quadratic placement approach using an accurate net model

  Spindler, P., Schlichtmann, U. & Johannes, F. M., Aug. 2008, in: IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 27, 8, S. 1398-1411 14 S., 4527110.

  Publikation: Beitrag in Fachzeitschrift › Artikel › Begutachtung

  • Net Model 100%
  • Force-directed 100%
  • Quadratic Placement 100%
  • Computational Efficiency 100%
  • Quadratic Cost 100%
  168 Zitate (Scopus)
• 2007

  Fast and accurate routing demand estimation for efficient routability-driven placement

  Spindler, P. & Johannes, F. M., 2007, Proceedings - 2007 Design, Automation and Test in Europe Conference and Exhibition, DATE 2007. S. 1226-1231 6 S. 4211973. (Proceedings -Design, Automation and Test in Europe, DATE).

  Publikation: Beitrag in Buch/Bericht/Konferenzband › Konferenzbeitrag › Begutachtung

  • Demand Estimation 100%
  • Routability 100%
  • Placer 100%
  • Supply and Demand 100%
  • Placers 100%
  92 Zitate (Scopus)
• 2006

  Fast and robust quadratic placement combined with an exact linear net model

  Spindler, P. & Johannes, F. M., 2006, Proceedings of the 2006 International Conference on Computer-Aided Design, ICCAD. S. 179-186 8 S. 4110171. (IEEE/ACM International Conference on Computer-Aided Design, Digest of Technical Papers, ICCAD).

  Publikation: Beitrag in Buch/Bericht/Konferenzband › Konferenzbeitrag › Begutachtung

  Open Access

  • Net Model 100%
  • Quadratic Placement 100%
  • Cost Function 100%
  • Clique 100%
  • Tradeoff 100%
  33 Zitate (Scopus)
• 2005

  KRAFTWERK - A versatile placement approach

  Obermeier, B., Ranke, H. & Johannes, F. M., 2005, S. 242-244. 3 S.

  Publikation: Konferenzbeitrag › Papier › Begutachtung

  • Network Flow 100%
  • Flexible Tool 100%
  • Design Condition 100%
  • Domino 100%
  • Global Placement 100%
  14 Zitate (Scopus)
• 2004

  Quadratic placement using an improved timing model

  Obermeier, B. & Johannes, F. M., 2004, in: Proceedings - Design Automation Conference. S. 705-710 6 S.

  Publikation: Beitrag in Fachzeitschrift › Konferenzartikel › Begutachtung

  Open Access

  • Timing Model 100%
  • Net Model 100%
  • Quadratic Placement 100%
  • State-of-the-Art Method 100%
  • Placement Method 100%
  10 Zitate (Scopus)

• Temperature-aware global placement

  Obermeier, B. & Johannes, F. M., 2004, S. 143-148. 6 S.

  Publikation: Konferenzbeitrag › Papier › Begutachtung

  • Temperature Sensing 100%
  • Total Energy Consumption 100%
  • Global Placement 100%
  • Electric Power Utilization 100%
  • Overall Power 50%
  40 Zitate (Scopus)
• 2003

  Performance-directed retiming for FPGAs using post-placement delay information

  Seidl, U., Eckl, K. & Johannes, F., 2003, in: Proceedings -Design, Automation and Test in Europe, DATE. S. 770-775 6 S., 1253700.

  Publikation: Beitrag in Fachzeitschrift › Konferenzartikel › Begutachtung

  • Field Programmable Gate Arrays 100%
  • Retiming 100%
  • Delayed Information 100%
  • Information Delay 100%
  • Interconnect Delay 66%
  4 Zitate (Scopus)